View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1845_high_30 (Length: 239)
Name: NF1845_high_30
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1845_high_30 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 33633470 - 33633250
Alignment:
| Q |
19 |
gcaattacaattacgttaccattgcgatactgctaaaacctagttgcaacaatcgggattgtggactgcaattttgaactaaaatgtgaggactgattta |
118 |
Q |
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| T |
33633470 |
gcaattacaattacgttaccattgcgatactgctaaaacctagttgaaacaatcgggattgtggactgcaattttgaactaaaatgtgaggactgattta |
33633371 |
T |
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| Q |
119 |
actgaagaagttctattgtgttggagcaactcatatttttgaatgaacaacttaactatatttactatattttaacgtgacttaagaagttagtccattg |
218 |
Q |
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| T |
33633370 |
actgaagaagttctattgtgttggagcaactcatatttttgaatgaccaacttaactatatttactatattttaacgtgacttaagaagttagtccattg |
33633271 |
T |
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| Q |
219 |
aattcgttcgttagagtactt |
239 |
Q |
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| T |
33633270 |
aattcgttcgttagagtactt |
33633250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 29192478 - 29192692
Alignment:
| Q |
21 |
aattacaattacgttaccattgcgatactgctaaaacctagttgcaacaatcgggattgtggactgcaattttgaactaaaatgtgaggactgatttaac |
120 |
Q |
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| T |
29192478 |
aattgcaattacattaccgttgagggacttctaaaacctagttgcaacaattgggattgtagactgcaattttgaactaaaatgttaggactgatttaac |
29192577 |
T |
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| Q |
121 |
tgaagaagttctattgtgttggagcaactcatatttttgaatgaacaacttaactatatttactatattttaacgtgacttaagaagttagtccattgaa |
220 |
Q |
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| T |
29192578 |
tgaaggagttctattgcgttcgagcaactcatatttttgaaggatcaact----tatatttactagattttaatgtgacttgaaaagttagtccattgaa |
29192673 |
T |
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| Q |
221 |
ttcgttcgttagagtactt |
239 |
Q |
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| T |
29192674 |
ttcgttcttttgagtactt |
29192692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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