View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1845_high_6 (Length: 435)
Name: NF1845_high_6
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1845_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 13718108 - 13718513
Alignment:
| Q |
18 |
gctttcaagaagatggaatacctcataacac--taattattttgtatggtcaatttactgaatgtccgaaacatattttggatggcaattcgcgcaaacc |
115 |
Q |
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| T |
13718108 |
gctttcaagaagatggaatacctcataacacactaattattttgtatggtcaatttactgaatgtccgaaacatattttggatggcaattcgtgcaaacc |
13718207 |
T |
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| Q |
116 |
aatttggccgaaaccacctccagcagaagtgatacatatggagaaacagaaaaggaaaagaagaaaaggaaggagagttggattgcggtgatattctacc |
215 |
Q |
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| T |
13718208 |
aatttggccgaaaccacctccagcagaagtggtacatatggagaaacagaaaaggaaaagaagaagaggaaggagagttggattgcggtgatattccacc |
13718307 |
T |
|
| Q |
216 |
accactacaattcaaccctcctttccctttatcctttcccttttcgctctactgacaccaaccaaatagaaagatgtaaatggccattaatgaggacaat |
315 |
Q |
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| T |
13718308 |
accactacaattcaaccgtcctttccctttatcctttcccttttcgctctactgacaccaaccaaatagaaagatgtaaatgcccattaatgaggacaat |
13718407 |
T |
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| Q |
316 |
ggatgatgactttacgctggacaatgaagacgcgtagtaacctcaaatccaaaattgatatttcattctcatacatttctggttttatagatagtgttct |
415 |
Q |
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| T |
13718408 |
ggatgatgactttacgctggacaatgaagacgcgtagtaacctcaaatccgaaattgatatttcattctcatacatttctggttttatagatagtgttct |
13718507 |
T |
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| Q |
416 |
cctttg |
421 |
Q |
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| T |
13718508 |
cctttg |
13718513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 418
Target Start/End: Original strand, 27322275 - 27322397
Alignment:
| Q |
292 |
taaatggccattaatgaggacaatggatgatgactttacgctggacaatgaagacgcgtagtaacctcaaatccaaaattgatatttcattctcatacat |
391 |
Q |
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|||||| ||||||| ||||| ||||||||| |||||||||||| ||||||| || |||| |||||||||| ||||||| || || |||||||| | |
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| T |
27322275 |
taaatgcccattaacgaggataatggatgaggactttacgctgaccaatgaaaacacgta----cctcaaatccggaattgatgttccagtctcatacgt |
27322370 |
T |
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| Q |
392 |
ttctggttttatagatagtgttctcct |
418 |
Q |
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| T |
27322371 |
ttctgcttttatagatagtgttctcct |
27322397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 29470125 - 29470183
Alignment:
| Q |
18 |
gctttcaagaagatggaatacctcataacactaattattttgtatggtcaatttactga |
76 |
Q |
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| T |
29470125 |
gctttcaagaagatggaaaacctcagaacactaattattatggatggccaatttactga |
29470183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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