View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1845_high_7 (Length: 432)
Name: NF1845_high_7
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1845_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 21188196 - 21187815
Alignment:
| Q |
18 |
aaatgcacaagtgtgttgaattattgcggtaaaatcagttctagaaaagatatttgacggaaatagatggggggagatatcctatttgtatatgcatata |
117 |
Q |
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|||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21188196 |
aaatgcacgagtgtattgaattactgcggtaaaatcagttctagaaaagatatttgacggaaatagatggggggagatatcctatatgtatatgcatata |
21188097 |
T |
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| Q |
118 |
ccccttttttgtgacagggtgtatattaccttaagatatatatgatgctaaaagttttctaagggagaatgagtatcattttctctatttttgagctgtg |
217 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
21188096 |
ccccttttttgtgacagggtgtatat-------------atatgatgctaa-----------gggagaatgagtttcattttctctatttttgagctgtg |
21188021 |
T |
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| Q |
218 |
tgcatcatcttctactgagnnnnnnnngcaccaattgatgttattagatagctctttttattttagtgtgattgataaatatgaagaaggtggggcaatc |
317 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21188020 |
tgcatcatcttctactgagttttttttgcaccaattgatgttattagatagctctttttattttagtgtgattgataaatatgaagaaggtggggcaatc |
21187921 |
T |
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| Q |
318 |
tatgtaaacattaatcattgaagaaatgaagtgagtggttggatgaaaaagctctattgcatgaaggatccacttaccaccaaaattttcccccttctcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21187920 |
tatgtaaacattaatcattgaagaaatgaagtgagtggttggatgaaaaagctctattgcatgaaggatccacttaccaccaaatttttcccccttctcc |
21187821 |
T |
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