View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1845_low_1 (Length: 579)
Name: NF1845_low_1
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1845_low_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 14 - 579
Target Start/End: Complemental strand, 44543338 - 44542779
Alignment:
| Q |
14 |
catacttggcacgtttaagttactgaacatgaataccaaacaaattctaatggccacatgttattgttccgaaagtattttgcttgaactaaaattgcgg |
113 |
Q |
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| T |
44543338 |
catacttggcacgtttaagttactcaacatgaataccaaacaaattctaatggccacatgttattgttccgaaagtattttgcttgaactaaaattgcgg |
44543239 |
T |
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| Q |
114 |
tgagttaacaagaacaaatgatgggcaatattcaaacacgtgtctcccattcttaacatgtgggaagctggtgaaggttccaagtgatgaatccgaacaa |
213 |
Q |
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| T |
44543238 |
tgagttaacaagaacaaatcatgggcaatattcaaacacgtgtctcccattcttaacatgtgggaagctggtgaaggttccaagtgatgaatccgaacaa |
44543139 |
T |
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| Q |
214 |
aacgaagaagcccgattctgtctcactctgcatgcatgatatcactccttctattatatttgtaagataataaataaacttcatctcttggctttgcttc |
313 |
Q |
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| T |
44543138 |
aacgaagaagcccgattctgtctcactctgcatgcatgatatcactccttctattatatttgtaagataataaataaacttcatctcttggctttgcttc |
44543039 |
T |
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| Q |
314 |
aattgacaaaggatgatggaggatgaaaagacaacaaacaaacatggaaagaagaaaatacacacttctttaggaagtataattattggtggtgaaggtg |
413 |
Q |
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| T |
44543038 |
aattgacaaaggatgatggaggatgaaaagacaacaaacaaacatggaaagaagaaaatacacacttctttaggaagtataactattggtggtgaaggtg |
44542939 |
T |
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| Q |
414 |
gaattacgggacttcttgtgttcggtggagcattggccattgcaggtttcatggctgtgacttcttttggaagcaaacaacataagaaaaaacccatcat |
513 |
Q |
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| T |
44542938 |
gaattacgggacttcttgtgttcggtggagcattggctattgcaggtttcatggctgtgacttcttttggaagcaaacaacataagaaaaaacccatcat |
44542839 |
T |
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| Q |
514 |
ccatcctcagtctcaccaccaacaattattattggctcacgataaagactctcttcaaaattcaac |
579 |
Q |
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| T |
44542838 |
ccatc------ctcaccaccaacaattattattggctgacgataaacactctcttcaaaattcaac |
44542779 |
T |
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