View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1845_low_10 (Length: 368)

Name: NF1845_low_10
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1845_low_10
NF1845_low_10
[»] chr1 (2 HSPs)
chr1 (7-362)||(5325880-5326235)
chr1 (220-317)||(22587942-22588038)
[»] chr8 (4 HSPs)
chr8 (220-317)||(15347836-15347933)
chr8 (220-317)||(15436901-15436998)
chr8 (220-317)||(15528205-15528302)
chr8 (37-116)||(26460595-26460674)
[»] chr7 (2 HSPs)
chr7 (228-317)||(12762336-12762425)
chr7 (168-225)||(4896293-4896349)
[»] chr6 (1 HSPs)
chr6 (228-317)||(7404551-7404640)
[»] chr5 (1 HSPs)
chr5 (228-317)||(19909902-19909991)
[»] chr2 (4 HSPs)
chr2 (228-317)||(30974947-30975036)
chr2 (250-317)||(18366762-18366829)
chr2 (168-208)||(18366697-18366737)
chr2 (168-228)||(22830960-22831019)
[»] chr3 (1 HSPs)
chr3 (175-227)||(35085707-35085758)


Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 7 - 362
Target Start/End: Complemental strand, 5326235 - 5325880
Alignment:
Q  7 tttatctcctcgttgagaagcatatgtttggttttttgttttggttaagtactatttcttgaataatgagagaaacataaactagaatcacaccatgatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5326235 tttatctcctcgttgagaagcatatgtttggttttttgttttggttaagtactatttcttgaataatgagagaaacataaactagaatcacaccatgatt 5326136  T
Q  107 tgttaactatatacaaagcttctaaagtttgaattaatactagcatcatgtaacactcacaaagaattgaagcacttgatttactacacattcaaaggca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5326135 tgttaactatatacaaagcttctaaagtttgaattaatactagcatcatgtaacactcacaaagaattgaagcacttgatttactacacattcaaaggca 5326036  T
Q  207 ataatttttcaaggattttgggttaatattttcttcatttttatgtagctatttcaattattaaaccaactttgttatttaccaaggaagtcctatagtc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5326035 ataatttttcaaggattttgggttaatattttcttcatttttatgtagctatttcaattattaaaccaactttgttatttaccaaggaagtcctatagtc 5325936  T
Q  307 cccttacattttgtgttgtagtgatcttataagaagatttgaatattgatgatgtc 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5325935 cccttacattttgtgttgtagtgatcttataagaagatttgaatatttatgatgtc 5325880  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 317
Target Start/End: Complemental strand, 22588038 - 22587942
Alignment:
Q  220 gattttgggttaatattttcttcatttttatgtagctatttcaattattaaaccaactttgttatttaccaaggaagtcctatagtccccttacattt 317  Q
    ||||||| ||||||||||||||| ||||  ||||||||||||||||| |||| ||||| ||||||||||||| | ||| ||||||||||| |||||||    
T  22588038 gattttgagttaatattttcttccttttc-tgtagctatttcaattaataaatcaactatgttatttaccaatggagttctatagtccccatacattt 22587942  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 220 - 317
Target Start/End: Complemental strand, 15347933 - 15347836
Alignment:
Q  220 gattttgggttaatattttcttcatttttatgtagctatttcaattattaaaccaactttgttatttaccaaggaagtcctatagtccccttacattt 317  Q
    ||||||| ||||||||||||||  ||||||||||||||||||||||| |||| ||||||||||||||||||| | ||| ||||||||||| |||||||    
T  15347933 gattttgagttaatattttctttctttttatgtagctatttcaattaataaatcaactttgttatttaccaatggagttctatagtccccatacattt 15347836  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 220 - 317
Target Start/End: Complemental strand, 15436998 - 15436901
Alignment:
Q  220 gattttgggttaatattttcttcatttttatgtagctatttcaattattaaaccaactttgttatttaccaaggaagtcctatagtccccttacattt 317  Q
    ||||||| ||||||||||||||  ||||||||||||||||||||||| |||| ||||||||||||||||||| | ||| ||||||||||| |||||||    
T  15436998 gattttgagttaatattttctttctttttatgtagctatttcaattaataaatcaactttgttatttaccaatggagttctatagtccccatacattt 15436901  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 220 - 317
Target Start/End: Complemental strand, 15528302 - 15528205
Alignment:
Q  220 gattttgggttaatattttcttcatttttatgtagctatttcaattattaaaccaactttgttatttaccaaggaagtcctatagtccccttacattt 317  Q
    ||||||| ||||||||||||||  ||||||||||||||||||||||| |||| ||||||||||||||||||| | ||| ||||||||||| |||||||    
T  15528302 gattttgagttaatattttctttctttttatgtagctatttcaattaataaatcaactttgttatttaccaatggagttctatagtccccatacattt 15528205  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 26460674 - 26460595
Alignment:
Q  37 gttttttgttttggttaagtactatttcttgaataatgagagaaacataaactagaatcacaccatgatttgttaactat 116  Q
    |||||| |||||||| |||||||||||| |||||||||| |  |||||||||||  |||| |||| |||||| |||||||    
T  26460674 gtttttcgttttggtaaagtactatttcatgaataatgatatcaacataaactattatcagaccaggatttgataactat 26460595  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 12762425 - 12762336
Alignment:
Q  228 gttaatattttcttcatttttatgtagctatttcaattattaaaccaactttgttatttaccaaggaagtcctatagtccccttacattt 317  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||| | ||| ||||||||||| |||||||    
T  12762425 gttaatattttcttcctttttctgtagctatttcaattaataaatcaactttgttatttaccaatggagttctatagtccccatacattt 12762336  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 4896293 - 4896349
Alignment:
Q  168 aagaattgaagcacttgatttactacacattcaaaggcaataatttttcaaggatttt 225  Q
    |||| |||||||||||||||| |||||||| || |||||| || ||||||||||||||    
T  4896293 aagagttgaagcacttgatttgctacacatccagaggcaagaa-ttttcaaggatttt 4896349  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 7404640 - 7404551
Alignment:
Q  228 gttaatattttcttcatttttatgtagctatttcaattattaaaccaactttgttatttaccaaggaagtcctatagtccccttacattt 317  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||| | ||| ||||||||||| |||||||    
T  7404640 gttaatattttcttcctttttctgtagctatttcaattaataaatcaactttgttatttaccaatggagttctatagtccccatacattt 7404551  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 317
Target Start/End: Original strand, 19909902 - 19909991
Alignment:
Q  228 gttaatattttcttcatttttatgtagctatttcaattattaaaccaactttgttatttaccaaggaagtcctatagtccccttacattt 317  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||| | ||| ||||||||||| |||||||    
T  19909902 gttaatattttcttcctttttctgtagctatttcaattaataaatcaactttgttatttaccaatggagttctatagtccccatacattt 19909991  T

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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 30975036 - 30974947
Alignment:
Q  228 gttaatattttcttcatttttatgtagctatttcaattattaaaccaactttgttatttaccaaggaagtcctatagtccccttacattt 317  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||| | ||| ||||| ||||| |||||||    
T  30975036 gttaatattttcttcctttttctgtagctatttcaattaataaatcaactttgttatttaccaatggagttctatattccccatacattt 30974947  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 317
Target Start/End: Original strand, 18366762 - 18366829
Alignment:
Q  250 tgtagctatttcaattattaaaccaactttgttatttaccaaggaagtcctatagtccccttacattt 317  Q
    ||||||||||||||||| |||| ||||||||||||||| ||| | ||| ||||||||||| |||||||    
T  18366762 tgtagctatttcaattaataaatcaactttgttatttatcaatggagttctatagtccccatacattt 18366829  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 18366697 - 18366737
Alignment:
Q  168 aagaattgaagcacttgatttactacacattcaaaggcaat 208  Q
    |||| ||||||||||||||||  ||||||||||||||||||    
T  18366697 aagagttgaagcacttgatttggtacacattcaaaggcaat 18366737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 22830960 - 22831019
Alignment:
Q  168 aagaattgaagcacttgatttactacacattcaaaggcaataatttttcaaggattttggg 228  Q
    |||| |||||||||||||||| ||||||||  | | ||||||| |||||||||||||||||    
T  22830960 aagagttgaagcacttgatttgctacacatctagaagcaataa-ttttcaaggattttggg 22831019  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 35085758 - 35085707
Alignment:
Q  175 gaagcacttgatttactacacattcaaaggcaataatttttcaaggattttgg 227  Q
    |||||||||||||| |||||||| || |||||| || ||||||||||||||||    
T  35085758 gaagcacttgatttgctacacatccagaggcaagaa-ttttcaaggattttgg 35085707  T

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