View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1845_low_11 (Length: 347)

Name: NF1845_low_11
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1845_low_11
NF1845_low_11
[»] chr5 (17 HSPs)
chr5 (18-347)||(30241884-30242213)
chr5 (33-338)||(29853594-29853905)
chr5 (22-336)||(30483673-30483993)
chr5 (22-336)||(30338039-30338359)
chr5 (33-343)||(29872457-29872773)
chr5 (33-327)||(30712948-30713248)
chr5 (33-327)||(30436099-30436399)
chr5 (37-347)||(30400361-30400677)
chr5 (37-312)||(30060656-30060937)
chr5 (37-312)||(30749930-30750211)
chr5 (33-340)||(30206805-30207118)
chr5 (177-336)||(30676802-30676961)
chr5 (34-322)||(30521153-30521447)
chr5 (34-322)||(30561493-30561787)
chr5 (42-223)||(17983199-17983386)
chr5 (33-281)||(30475658-30475912)
chr5 (256-322)||(17983410-17983476)
[»] chr7 (1 HSPs)
chr7 (22-346)||(26707604-26707934)
[»] chr4 (3 HSPs)
chr4 (37-346)||(20296086-20296401)
chr4 (33-281)||(52352242-52352496)
chr4 (33-173)||(13616880-13617019)
[»] chr1 (2 HSPs)
chr1 (33-347)||(7581222-7581542)
chr1 (33-347)||(7099704-7100024)
[»] chr3 (1 HSPs)
chr3 (33-283)||(25293491-25293747)


Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 30242213 - 30241884
Alignment:
Q  18 taatttcctctttgcaataaatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaa 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30242213 taatttcctctttgcaataaatccattagccattcagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaa 30242114  T
Q  118 cattgttttagggttggtgttaaataaaagtaactcagcctcaaagcaggcaaaatttcttgtggcaaggcccaaagctcgctatctttaatttcaagcc 217  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30242113 cattgttttagagttggtgttaaataaaagtaactcaacctcaaagcaggcaaaatttcttgtggcaaggcccaaagctcgctatctttaatttcaagcc 30242014  T
Q  218 attcctcttcttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattgcatttctttacgatctcctttcctattttcac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  30242013 attcctcttcttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattacatttctttacaatctcctttcctattttcac 30241914  T
Q  318 aagctttgtactctcttctctataatgtcc 347  Q
    ||||||||||||||||||||||||||||||    
T  30241913 aagctttgtactctcttctctataatgtcc 30241884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 33 - 338
Target Start/End: Original strand, 29853594 - 29853905
Alignment:
Q  33 aataaatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagggtt 132  Q
    ||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||    
T  29853594 aataaatccattagccatccaaagttgaatcaattcttctttcaggatttctccatccttgggaaatatagcgcaaaaggagaaacattgttttagggtt 29853693  T
Q  133 ggtgttaaataaaagtaactcagcctcaaagcaggcaaaat------ttcttgtggcaaggcccaaagctcgctatctttaatttcaagccattcctctt 226  Q
    |||||||||||||||||||||| |||||||||| |||||||      ||||||||| || ||||||||||| || |||||||| ||||||||||||| ||    
T  29853694 ggtgttaaataaaagtaactcaacctcaaagcaagcaaaatagaattttcttgtggtaaagcccaaagctcactgtctttaatatcaagccattcctttt 29853793  T
Q  227 cttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattgcatttctttacgatctcctttcctattttcacaagctttgt 326  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||    
T  29853794 cttcattccttgagctcatcaaacctcccaatgtttttgctgcaagaggcaatccattacatttctttacaatctcctttcctatttccacaagctttgt 29853893  T
Q  327 actctcttctct 338  Q
    |  |||||||||    
T  29853894 atgctcttctct 29853905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 336
Target Start/End: Original strand, 30483673 - 30483993
Alignment:
Q  22 ttcctctttgcaataaatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacatt 121  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  30483673 ttcctctttgcaataaatccattagccatccaaagctgaatcaattcttccttcaggatttctctatctttgggaaatatagcacaaaaggagaaacatt 30483772  T
Q  122 gttttagggttggtgttaaataaaagtaactcagcctcaaagcaggcaaaa------tttcttgtggcaaggcccaaagctcgctatctttaatttcaag 215  Q
    | ||||||||||||||||||||||||||||||| |||||||||||| ||||      |||| ||||| ||  |||||||||| || |||||||| |||||    
T  30483773 gctttagggttggtgttaaataaaagtaactcaacctcaaagcaggtaaaatagatttttcatgtggtaaatcccaaagctcactgtctttaatatcaag 30483872  T
Q  216 ccattcctcttcttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattgcatttctttacgatctcctttcctattttc 315  Q
    |||||||| |||||||||| |||||  ||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| || | |    
T  30483873 ccattccttttcttcattcattgagaccattaaaccccccaatgcttttgctgcaagaggcaatccattacatttctttactatctcctttccaatctcc 30483972  T
Q  316 acaagctttgtactctcttct 336  Q
    ||||||||||||  |||||||    
T  30483973 acaagctttgtatgctcttct 30483993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 336
Target Start/End: Complemental strand, 30338359 - 30338039
Alignment:
Q  22 ttcctctttgcaataaatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacatt 121  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  30338359 ttcctctttgcaataaatccattagccatccaaagttgaatcaattcttccttcaggatttctctatctttgggaaatatagcacaaaaggagaaacatt 30338260  T
Q  122 gttttagggttggtgttaaataaaagtaactcagcctcaaagcaggcaaaa------tttcttgtggcaaggcccaaagctcgctatctttaatttcaag 215  Q
    | |||||||||||||||||||||||||||||||  ||||||||||| ||||      |||| ||||| ||  |||||||||| || |||||||| |||||    
T  30338259 gctttagggttggtgttaaataaaagtaactcaaactcaaagcaggtaaaatagatttttcatgtggtaaatcccaaagctcactgtctttaatatcaag 30338160  T
Q  216 ccattcctcttcttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattgcatttctttacgatctcctttcctattttc 315  Q
    |||||||| |||||||||| |||||  ||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||| |    
T  30338159 ccattccttttcttcattcattgagaccattaaaccccccaatgcttttgctgcaagaggcaatccattacatttctttactatctcctttccaatttcc 30338060  T
Q  316 acaagctttgtactctcttct 336  Q
    ||||||||||||  |||||||    
T  30338059 acaagctttgtatcctcttct 30338039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 33 - 343
Target Start/End: Original strand, 29872457 - 29872773
Alignment:
Q  33 aataaatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagggtt 132  Q
    ||||||| ||||||||||||| || |||||||||||||| |||||||||| || ||| |||||||||||||| ||||||||||||||||| |||||||||    
T  29872457 aataaattcattagccatccaaagttgaatcaattcttctttcaggatttttctatccttgggaaatatagcgcaaaaagagaaacattgctttagggtt 29872556  T
Q  133 ggtgttaaataaaagtaactcagcctcaaagcaggcaaaat------ttcttgtggcaaggcccaaagctcgctatctttaatttcaagccattcctctt 226  Q
    |||||||||||||||||||||| |||||||||| |||||||      |||||| |  || ||||||||||| || || ||||| ||||||||||||| ||    
T  29872557 ggtgttaaataaaagtaactcaacctcaaagcaagcaaaatagaattttcttgcgataaagcccaaagctcactgtccttaatatcaagccattcctttt 29872656  T
Q  227 cttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattgcatttctttacgatctcctttcctattttcacaagctttgt 326  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| || |||||||||    
T  29872657 cttcattccttgagctcatcaaacctcccaatgcttttgctgcaagaggcaatccattacatttctttacaatctcctttcctatttccataagctttgt 29872756  T
Q  327 actctcttctctataat 343  Q
    |  ||||||||| ||||    
T  29872757 atgctcttctctgtaat 29872773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 33 - 327
Target Start/End: Complemental strand, 30713248 - 30712948
Alignment:
Q  33 aataaatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagggtt 132  Q
    ||||||||||||||||||||| ||  ||||||||||||| || |||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||    
T  30713248 aataaatccattagccatccaaagtcgaatcaattcttcttttaggatttctctatccttgggaaatatagcacaaaaagagaaacattgctttagggtt 30713149  T
Q  133 ggtgttaaataaaagtaactcagcctcaaagcaggcaaaa------tttcttgtggcaaggcccaaagctcgctatctttaatttcaagccattcctctt 226  Q
    |||| |||||||||||||||||||||||||||||||||||      |||||||||| || ||||||||||| || |||||||| ||||||||||| | ||    
T  30713148 ggtgataaataaaagtaactcagcctcaaagcaggcaaaatagaattttcttgtggtaaagcccaaagctcactgtctttaatatcaagccattcatttt 30713049  T
Q  227 cttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattgcatttctttacgatctcctttcctattttcacaagctttgt 326  Q
    ||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||| ||||||||| | |||||||||||||||| ||||| ||||||    
T  30713048 cttcattccttgagctcatcaaaccccccaatgcttttgctgcaagtggcaatccattacatttctttgctatctcctttcctatttccacaaactttgt 30712949  T
Q  327 a 327  Q
    |    
T  30712948 a 30712948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 33 - 327
Target Start/End: Original strand, 30436099 - 30436399
Alignment:
Q  33 aataaatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagggtt 132  Q
    ||||||| ||||||||||||| ||  ||||||||||||| || |||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||    
T  30436099 aataaattcattagccatccaaagtcgaatcaattcttcttttaggatttctctatccttgggaaatatagcacaaaaagagaaacattgctttagggtt 30436198  T
Q  133 ggtgttaaataaaagtaactcagcctcaaagcaggcaaaat------ttcttgtggcaaggcccaaagctcgctatctttaatttcaagccattcctctt 226  Q
    ||||||||||||||||||||||  |||||||| ||||||||      ||||||||| || ||||||||||| || |||||||| ||||||||||||| ||    
T  30436199 ggtgttaaataaaagtaactcaatctcaaagcgggcaaaatagaattttcttgtggtaaagcccaaagctcactgtctttaatatcaagccattcctttt 30436298  T
Q  227 cttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattgcatttctttacgatctcctttcctattttcacaagctttgt 326  Q
    ||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||| ||||| ||||||    
T  30436299 cttcattccttgagctcatcaaaccccccaatgcttttgctgcaagaggcaatccattacatttctttactatctcctttccaatttccacaaactttgt 30436398  T
Q  327 a 327  Q
    |    
T  30436399 a 30436399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 37 - 347
Target Start/End: Original strand, 30400361 - 30400677
Alignment:
Q  37 aatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagggttggtg 136  Q
    ||||||||||||||||| ||||||||||||||||| |||| |||||| | ||| |||||||||||||||||||||||||||||||| |||||||| ||||    
T  30400361 aatccattagccatccaaagctgaatcaattcttctttcaagatttccctatccttgggaaatatagcacaaaaagagaaacattgctttagggtcggtg 30400460  T
Q  137 ttaaataaaagtaactcagcctcaaagcaggcaaaat------ttcttgtggcaaggcccaaagctcgctatctttaatttcaagccattcctcttcttc 230  Q
    |||||||||||||||||| |||||||| | |||||||      ||||| ||| || |||||||||||  | |||||||| ||||||||||||| |||| |    
T  30400461 ttaaataaaagtaactcaacctcaaagaacgcaaaatataattttcttctggtaaagcccaaagctcagtgtctttaatatcaagccattccttttctcc 30400560  T
Q  231 attccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattgcatttctttacgatctcctttcctattttcacaagctttgtactc 330  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||   ||||| | || || |    
T  30400561 attccttgagctcatcaaacctcccaatgcttttgctgcaagaggcaatccattacatttctttactatctcctttcctattgctacaagttctgcacgc 30400660  T
Q  331 tcttctctataatgtcc 347  Q
    |||||||||||||||||    
T  30400661 tcttctctataatgtcc 30400677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 37 - 312
Target Start/End: Original strand, 30060656 - 30060937
Alignment:
Q  37 aatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagggttggtg 136  Q
    ||||||||||||||||| |||  ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||  |    
T  30060656 aatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccg 30060755  T
Q  137 ttaaataaaagtaactcagcctcaaagcaggcaaaa------tttcttgtggcaaggcccaaagctcgctatctttaatttcaagccattcctcttcttc 230  Q
     ||||||||||||||||| |||||||||||||||||      |||| | ||  ||  ||||||| || || |||||||||| ||||||||||| ||| ||    
T  30060756 gtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatc 30060855  T
Q  231 attccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattgcatttctttacgatctcctttcctatt 312  Q
     ||||||||| ||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  30060856 tttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcctatt 30060937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 37 - 312
Target Start/End: Original strand, 30749930 - 30750211
Alignment:
Q  37 aatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagggttggtg 136  Q
    ||||||||||||||||| |||  |||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||  |    
T  30749930 aatccattagccatccaaagccaaatcaatttttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccg 30750029  T
Q  137 ttaaataaaagtaactcagcctcaaagcaggcaaaa------tttcttgtggcaaggcccaaagctcgctatctttaatttcaagccattcctcttcttc 230  Q
     ||||||||||||||||| |||||||||||||||||      |||| | ||  ||  ||||||| || ||||||||||||| ||||||||||| ||| ||    
T  30750030 gtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactatctttaattttaagccattccttttcatc 30750129  T
Q  231 attccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattgcatttctttacgatctcctttcctatt 312  Q
     ||||||||| ||||||||| |||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||    
T  30750130 tttccttgagttcattaaacttcccaatgcttttgctgcaagaggcaatccattacatttctttactatctcctttcctatt 30750211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 33 - 340
Target Start/End: Original strand, 30206805 - 30207118
Alignment:
Q  33 aataaatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagggtt 132  Q
    ||||||| ||||||||||||| || ||||||||||||||| ||| || ||||  |||||||||||| ||||||||||||| ||||||  | |||| ||||    
T  30206805 aataaattcattagccatccaaagatgaatcaattcttccctcacgaattctgtatctttgggaaacatagcacaaaaagcgaaacaccgctttaaggtt 30206904  T
Q  133 ggtgttaaataaaagtaactcagcctcaaagcaggcaaaat----ttct--tgtggcaaggcccaaagctcgctatctttaatttcaagccattcctctt 226  Q
    || ||||||| |||||| |||| |||||||||||| |||||    ||||  ||||| || |||||||| || || |||||||||||||||||||| | ||    
T  30206905 ggagttaaatgaaagtagctcaacctcaaagcaggtaaaatataattctcatgtggtaaagcccaaagttcactctctttaatttcaagccattcttttt 30207004  T
Q  227 cttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattgcatttctttacgatctcctttcctattttcacaagctttgt 326  Q
    ||||||||||||| ||||||| ||||||||||||||  |||||||||||||||||||  ||||||||||| |||||||||||||||| |||||||| ||     
T  30207005 cttcattccttgaactcattagacctcccaatgcttgtgctgcaagaggcaatccatcacatttctttactatctcctttcctatttccacaagctctgc 30207104  T
Q  327 actctcttctctat 340  Q
    || |||||||||||    
T  30207105 acgctcttctctat 30207118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 177 - 336
Target Start/End: Complemental strand, 30676961 - 30676802
Alignment:
Q  177 ttgtggcaaggcccaaagctcgctatctttaatttcaagccattcctcttcttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggc 276  Q
    |||||| || ||||||||||| || |||||||| |||||||||||||  |||||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  30676961 ttgtggtaaagcccaaagctcactgtctttaatatcaagccattccttctcttcattccttgagctcatcaaaccccccaatgcttttgctgcaagaggc 30676862  T
Q  277 aatccattgcatttctttacgatctcctttcctattttcacaagctttgtactctcttct 336  Q
    |||||||| ||||||||||| ||||||||||| |||| |||||||||||||  |||||||    
T  30676861 aatccattacatttctttactatctcctttccaatttccacaagctttgtatcctcttct 30676802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 34 - 322
Target Start/End: Complemental strand, 30521447 - 30521153
Alignment:
Q  34 ataaatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagggttg 133  Q
    |||||||| || || |||||||| ||||| || ||| |||||| |||||||  |||||||||||| || |||||||||| |||||||||||||| |||||    
T  30521447 ataaatccgttggcgatccagagatgaattaaatctcccttcatgatttctatatctttgggaaacatggcacaaaaagtgaaacattgttttaaggttg 30521348  T
Q  134 gtgttaaataaaagtaactcagcctcaaagcaggcaaaat----ttct--tgtggcaaggcccaaagctcgctatctttaatttcaagccattcctcttc 227  Q
    |  |||||| |||||| |||| ||| ||||||||||||||    ||||  |  || || | ||||| |  |||||||||||||||||||||||| | |||    
T  30521347 ggtttaaatgaaagtagctcaaccttaaagcaggcaaaatagaattctcattcggtaaagaccaaatcctgctatctttaatttcaagccattctttttc 30521248  T
Q  228 ttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattgcatttctttacgatctcctttcctattttcacaagct 322  Q
    | || ||||||||| |||||  |||||||||||||  |||||||||||||||||    || |||||||| ||||| ||||||||| | |||||||    
T  30521247 tccactccttgagcacattaggcctcccaatgcttgtgctgcaagaggcaatcccccacacttctttactatctcttttcctattgtgacaagct 30521153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 34 - 322
Target Start/End: Complemental strand, 30561787 - 30561493
Alignment:
Q  34 ataaatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagggttg 133  Q
    |||||||| || || |||||||| ||||| || ||| |||||| |||||||  |||||||||||| || |||||||||| |||||||||||||| |||||    
T  30561787 ataaatccgttggcgatccagagatgaattaaatctcccttcatgatttctatatctttgggaaacatggcacaaaaagtgaaacattgttttaaggttg 30561688  T
Q  134 gtgttaaataaaagtaactcagcctcaaagcaggcaaaat----ttct--tgtggcaaggcccaaagctcgctatctttaatttcaagccattcctcttc 227  Q
    |  |||||| |||||| |||| ||| ||||||||||||||    ||||  |  || || | ||||| |  |||||||||||||||||||||||| | |||    
T  30561687 ggtttaaatgaaagtagctcaaccttaaagcaggcaaaatagaattctcattcggtaaagaccaaatcctgctatctttaatttcaagccattctttttc 30561588  T
Q  228 ttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattgcatttctttacgatctcctttcctattttcacaagct 322  Q
    | || ||||||||| |||||  |||||||||||||  |||||||||||||||||    || |||||||| ||||| ||||||||| | |||||||    
T  30561587 tccactccttgagcacattaggcctcccaatgcttgtgctgcaagaggcaatcccccacacttctttactatctcttttcctattgtgacaagct 30561493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 17983199 - 17983386
Alignment:
Q  42 attagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagggttggtgttaaa 141  Q
    |||||||||||| || ||||| | |||||| |||| ||||||| | ||||||||||||||||||||||||| |||||||||||||| |||||||| ||||    
T  17983199 attagccatccaaagatgaattagttcttctttcatgatttctgcttctttgggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaa 17983298  T
Q  142 taaaagtaactcagcctcaaagcaggcaaaat----ttct--tgtggcaaggcccaaagctcgctatctttaatttcaagccattcct 223  Q
    | |||||| |||| ||| | ||| || |||||    ||||  || || || ||||| |||||||| ||||||||||||| ||||||||    
T  17983299 tgaaagtagctcaaccttagagctgggaaaatagaattctcatgcggtaaagcccagagctcgctctctttaatttcaaaccattcct 17983386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 281
Target Start/End: Original strand, 30475658 - 30475912
Alignment:
Q  33 aataaatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagggtt 132  Q
    ||||||||||||  ||||||| || |||||||| |||||||| |  |||||   ||||||||||||||| ||||||||||  |||||  | |||| |||     
T  30475658 aataaatccattgcccatccatagatgaatcaaatcttcctttacaatttccatatctttgggaaatatcgcacaaaaagcaaaacaccgctttaaggtc 30475757  T
Q  133 ggtgttaaataaaagtaactcagcctcaaagcaggcaaaat----ttct--tgtggcaaggcccaaagctcgctatctttaatttcaagccattcctctt 226  Q
    |||||||||| |||||| || | |||||| || ||||||||    ||||  | ||| |||| ||| || |  || |||||||||||||||||||| | ||    
T  30475758 ggtgttaaatgaaagtagcttaacctcaaggctggcaaaatggaattctcatatggtaaggtccagagattactgtctttaatttcaagccattcatttt 30475857  T
Q  227 cttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatcc 281  Q
    | ||| ||||||||| ||||| ||||||||||||||  |||||||||||||||||    
T  30475858 catcactccttgagcgcattagacctcccaatgcttgtgctgcaagaggcaatcc 30475912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 322
Target Start/End: Original strand, 17983410 - 17983476
Alignment:
Q  256 aatgctttcgctgcaagaggcaatccattgcatttctttacgatctcctttcctattttcacaagct 322  Q
    |||||||| |||||||||||||||||    || || ||||| |||||||| ||||||||||||||||    
T  17983410 aatgcttttgctgcaagaggcaatcctccacacttttttactatctccttgcctattttcacaagct 17983476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 22 - 346
Target Start/End: Original strand, 26707604 - 26707934
Alignment:
Q  22 ttcctctttgcaataaatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacatt 121  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  26707604 ttcctctttgcaataaatccattagccatccaaagttgaatcaattcttccttcaagatttctctatctttgggaaatatagcacaaaaagagaaacatt 26707703  T
Q  122 gttttagggttggtgttaaataaaagtaactcagcctcaaagcaggcaaaa------tttcttgtggcaaggcccaaagctcgctatctttaatttcaag 215  Q
    | ||||||||||||||||||||||||||||||| |||||||||||||||||      |||||||||| ||  |||||||||| || |||||||| |||||    
T  26707704 gctttagggttggtgttaaataaaagtaactcaacctcaaagcaggcaaaatagatttttcttgtggtaaatcccaaagctcactgtctttaatatcaag 26707803  T
Q  216 ccattcctcttcttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattgcatttctttacgatctcctttcctattttc 315  Q
    |||||||| |||||||||| |||||  ||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| |||||||||||||||| |    
T  26707804 ccattccttttcttcattcattgagaacattaaacctcccaatgcttttgctgcaagaggtaatccattacatttttttactatctcctttcctatttcc 26707903  T
Q  316 acaagctttgtactctcttctctataatgtc 346  Q
    ||||||||||||  ||||||||| |||||||    
T  26707904 acaagctttgtatgctcttctctgtaatgtc 26707934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 37 - 346
Target Start/End: Complemental strand, 20296401 - 20296086
Alignment:
Q  37 aatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagggttggtg 136  Q
    ||||||||||||||||| ||||||||||||||||| |||| |||||||| ||| || ||||||||||||||||||||||||||||| ||||| |||||||    
T  20296401 aatccattagccatccaaagctgaatcaattcttctttcaagatttctctatccttaggaaatatagcacaaaaagagaaacattgctttagagttggtg 20296302  T
Q  137 ttaaataaaagtaactcagcctcaaagcaggcaaaa------tttcttgtggcaaggcccaaagctcgctatctttaatttcaagccattcctcttcttc 230  Q
    ||||||||||||||||||||||||||||||||||||      |||||||||| || |||||||| ||  | |||||||| ||| ||||||||| ||||||    
T  20296301 ttaaataaaagtaactcagcctcaaagcaggcaaaatagatttttcttgtggtaaagcccaaaggtcattgtctttaatatcacgccattccttttcttc 20296202  T
Q  231 attccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattgcatttctttacgatctcctttcctattttcacaagctttgtactc 330  Q
    |||| |||||  ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||  |    
T  20296201 attcattgagaccattaaacctcccaatgcttttgctgcaagaggcaatccattacatttctttactatctcctttcctatttccacaagctttgtatgc 20296102  T
Q  331 tcttctctataatgtc 346  Q
    |||||||| |||||||    
T  20296101 tcttctctgtaatgtc 20296086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 33 - 281
Target Start/End: Original strand, 52352242 - 52352496
Alignment:
Q  33 aataaatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagggtt 132  Q
    |||||||||||| ||||||||||| |||||||| || || || ||||||||   ||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  52352242 aataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacattgttttaaggtt 52352341  T
Q  133 ggtgttaaataaaagtaactcagcctcaaagcaggcaaaat----ttct--tgtggcaaggcccaaagctcgctatctttaatttcaagccattcctctt 226  Q
    |  |||||||  || ||||||| |||||| |||||||||||    ||||  | ||  || | |||||||| ||| ||||||||||||| |||||||| ||    
T  52352342 gacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattcctttt 52352441  T
Q  227 cttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatcc 281  Q
    || |||| ||||||| ||||| |||||| |||||||  || ||||||||||||||    
T  52352442 ctccatttcttgagcgcattagacctcctaatgcttgtgcagcaagaggcaatcc 52352496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 173
Target Start/End: Original strand, 13616880 - 13617019
Alignment:
Q  33 aataaatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagggtt 132  Q
    ||||||| ||||||||||||| || |||||||||||||||||   ||||| |  |||||| ||||||| | |||| |||| ||| |||||||| | ||||    
T  13616880 aataaattcattagccatccaaagatgaatcaattcttcctttgtgatttttgtatctttaggaaatacaacacagaaagcgaatcattgtttaaaggtt 13616979  T
Q  133 ggtgttaaataaaagtaactcagcctcaaagcaggcaaaat 173  Q
    || | |||||  |||||||||||||||||| |||| |||||    
T  13616980 ggcgataaat-gaagtaactcagcctcaaatcaggaaaaat 13617019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 33 - 347
Target Start/End: Complemental strand, 7581542 - 7581222
Alignment:
Q  33 aataaatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagggtt 132  Q
    ||||||| ||||||||||||| || ||||||||||||||||||| ||||| |  |||||| ||||||||||||||||||| |||||||||||||| ||||    
T  7581542 aataaattcattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggtt 7581443  T
Q  133 ggtgttaaataaaagtaactcagcctcaaagcaggcaa-----aatt-tcttgtggcaaggcccaaagctcgctatctttaatttcaagccattcctctt 226  Q
    |||| ||||| |||||| ||||  |||| ||| |||||     |||| || || || ||  ||||||||||||| ||||||||||||| |||||||| ||    
T  7581442 ggtgataaatgaaagtagctcaatctcagagctggcaaagtagaattctcatgcggtaaatcccaaagctcgctctctttaatttcaaaccattcctttt 7581343  T
Q  227 cttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattgcatttctttacgatctcctttcctattttcacaagctttgt 326  Q
    ||||| ||||||||  ||||| ||  ||||||||||  |||||||||||||||||    ||||| ||||| |||||||| ||||||  |||||||| ||     
T  7581342 cttcactccttgagtgcattagacaccccaatgcttgtgctgcaagaggcaatcccgcacatttttttactatctccttgcctattgccacaagctctgc 7581243  T
Q  327 actctcttctctataatgtcc 347  Q
    |||||||||||||| ||||||    
T  7581242 actctcttctctatcatgtcc 7581222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 33 - 347
Target Start/End: Original strand, 7099704 - 7100024
Alignment:
Q  33 aataaatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagggtt 132  Q
    ||||||||||||||||||||| || ||||||||||||||||||| ||||| |  ||||||| |||||||||||||||||| |||||||||||||| ||||    
T  7099704 aataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaatatagcacaaaaagcgaaacattgttttaaggtt 7099803  T
Q  133 ggtgttaaataaaagtaactcagcctcaaagcaggcaaaat----ttct--tgtggcaaggcccaaagctcgctatctttaatttcaagccattcctctt 226  Q
    |||| |||||  ||||| |||| ||||||||| ||||||||    ||||  || || || ||||| | ||| || ||||||||||| | |||| | | ||    
T  7099804 ggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagatctcactctctttaatttctaaccatgcttttt 7099903  T
Q  227 cttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattgcatttctttacgatctcctttcctattttcacaagctttgt 326  Q
    ||||| | |||||   ||||| ||  || |||||||  |||||||||||||||||    || || ||||| |||||||| ||||||||||||||||  |     
T  7099904 cttcacttcttgaatgcattagacaccctaatgcttgtgctgcaagaggcaatcctccacacttttttactatctccttgcctattttcacaagctcagc 7100003  T
Q  327 actctcttctctataatgtcc 347  Q
    || ||||||||| ||||||||    
T  7100004 acgctcttctctgtaatgtcc 7100024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 283
Target Start/End: Complemental strand, 25293747 - 25293491
Alignment:
Q  33 aataaatccattagccatccagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagggtt 132  Q
    ||||||||||||||||||||| || ||| |||||||||||||   ||||| |  |||||| ||||| |||||||||||||  |||||| | |||| |||     
T  25293747 aataaatccattagccatccaaagatgagtcaattcttccttatcgatttttgtatcttttggaaacatagcacaaaaagcaaaacatcgctttaaggtc 25293648  T
Q  133 ggtgttaaataaaagtaactcagcctcaaagcaggcaaaa------tttcttgtggcaaggcccaaagctcgctatctttaatttcaagccattcctctt 226  Q
    || |||||||||||||| |||| || ||| | ||| ||||      | |||||| | || |||||||||  |||    |||||||||||||| || | ||    
T  25293647 ggagttaaataaaagtagctcaaccacaaggaaggaaaaatagaattctcttgttgtaaagcccaaagcgtgctcagcttaatttcaagccactcttttt 25293548  T
Q  227 cttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccat 283  Q
    || || ||||||||| ||||| |||||| ||| |||  ||||||||||||| |||||    
T  25293547 ctccactccttgagcgcattagacctccaaatacttgtgctgcaagaggcagtccat 25293491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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