View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1845_low_12 (Length: 343)
Name: NF1845_low_12
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1845_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 30853424 - 30853764
Alignment:
| Q |
1 |
gattcatgttcttgatcttttaattgggagcaccatgttacaacaaaccctttttgtgtcnnnnnnncaaaatcttttcggagtttcggctcttcggatg |
100 |
Q |
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||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30853424 |
gattcatgtgctagaacttttaattgggagcaccatgttacaacaaaccctttttgtgtctttttttcaaaatcttttcggagtttcggctcttcggatg |
30853523 |
T |
|
| Q |
101 |
gtttaacaacccataagaagtaactttcacaatctgttaaagcacaagctacttcctctaattgttcttcattgagtgatgccaaactaccaaaagaagc |
200 |
Q |
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| T |
30853524 |
gtttaacaacccataagaagtaactttcacaatctgttaaagcacaagctacttcctctaattgttcttcattgagtgatgccaaactaccaaaagaagc |
30853623 |
T |
|
| Q |
201 |
ataaacaactgatccttttggcttatcatttagccattccataca---ttcttcactttggaattgtgttgcaccataatcttcatcatttttaattcgc |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30853624 |
ataaacaactgatccttttggcttatcatttagccattccatacattcttcttcactttggaattgtgttgcaccataatcttcatcatttttaattcgc |
30853723 |
T |
|
| Q |
298 |
ttgtctaagaacttggatggtatggaaggccctatgcttct |
338 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| |
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| T |
30853724 |
ttgtctaagaacttggatggtatggaaggccctatggttct |
30853764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 68 - 333
Target Start/End: Original strand, 30845015 - 30845283
Alignment:
| Q |
68 |
caaaatcttttcggagtttcggctcttcggatggtttaacaacccataagaagtaactttcacaatctgttaaagcacaagctacttcctctaattgttc |
167 |
Q |
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||||||||||| |||| || | |||||| || | | ||||||||||||||||||||||| ||| |||| ||||| || |||||| ||| | || ||| || |
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| T |
30845015 |
caaaatcttttgggagcttagtctcttcagaagctctaacaacccataagaagtaacttccactatctcttaaaccataagctaattcttgtatttgctc |
30845114 |
T |
|
| Q |
168 |
ttcattgagtgatgccaaactaccaaaagaagcataaacaactgatccttttggcttatcatttagccattccatacattcttc---actttggaattgt |
264 |
Q |
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|||| || | ||| ||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| ||| | | | ||||||| |
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| T |
30845115 |
ctcatcaagacttaccatacttccaaaagaaacataaacaactgatccttttggcttatcatttaaccattccatgcatttttcattagtcttgaattgt |
30845214 |
T |
|
| Q |
265 |
gttgcaccataatcttcatcatttttaattcgcttgtctaagaacttggatggtatggaaggccctatg |
333 |
Q |
| |
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| || || ||||||||||| | ||||| || ||||||||||||||| ||||||||||| || |||||| |
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| T |
30845215 |
gcagcgccgtaatcttcatcgtctttaagtctcttgtctaagaactttgatggtatggatggtcctatg |
30845283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 68 - 305
Target Start/End: Original strand, 30817302 - 30817539
Alignment:
| Q |
68 |
caaaatcttttcggagtttcggctcttcggatggtttaacaacccataagaagtaactttcacaatctgttaaagcacaagctacttcctctaattgttc |
167 |
Q |
| |
|
|||| |||||| |||| || | |||||| |||| ||| || |||||||||||||||||| |||||||| | ||| | ||||||||||||| |||||| |
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| T |
30817302 |
caaagtcttttgggagcttagtctcttcagatgttttcactacccataagaagtaacttccacaatctttcaaacaatgtgctacttcctctatttgttc |
30817401 |
T |
|
| Q |
168 |
ttcattgagtgatgccaaactaccaaaagaagcataaacaactgatccttttggcttatcatttagccattccatacattcttcactttggaattgtgtt |
267 |
Q |
| |
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|||||||||||||||| ||| ||||| ||| |||||||| | || | ||||||||||| |||||||||||| |||| ||| || |||| ||||||| |
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| T |
30817402 |
ctcattgagtgatgccatactcccaaatgaaacataaacagcagacctttttggcttattatttagccattctatactttcgtcgctttttaattgtgca |
30817501 |
T |
|
| Q |
268 |
gcaccataatcttcatcatttttaattcgcttgtctaa |
305 |
Q |
| |
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|| || ||||||||||| ||||| |||||| ||||| |
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| T |
30817502 |
atactatgatcttcatcatctttaactcgcttatctaa |
30817539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 104 - 332
Target Start/End: Original strand, 30840542 - 30840773
Alignment:
| Q |
104 |
taacaacccataagaagtaactttcacaatctgttaaagcacaagctacttcctctaattgttcttcattgagtgatgccaaactaccaaaagaagcata |
203 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| ||||| || |||||| ||| | || ||| || |||| || | ||| ||| ||||||||| |||| |
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| T |
30840542 |
taacaacccataagaagtaacttccactatctcttaaaccataagctaattcttgtatttgctcctcatcaagacttaccatacttccaaaagaaacata |
30840641 |
T |
|
| Q |
204 |
aacaactgatccttttggcttatcatttagccattccatacattcttcact---ttggaattgtgttgcaccataatcttcatcatttttaattcgcttg |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||| |||| | | |||||||| |||||||||||||||| | |||| || ||| |
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| T |
30840642 |
aacaactgatccttttggcttatcgtttagccattccatgcatttttcattatacttgaattgtgcaacaccataatcttcatcgtctttatgtctattg |
30840741 |
T |
|
| Q |
301 |
tctaagaacttggatggtatggaaggccctat |
332 |
Q |
| |
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||||||||| | ||||||||||| || ||||| |
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| T |
30840742 |
tctaagaacattgatggtatggatggtcctat |
30840773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 305
Target Start/End: Original strand, 30858809 - 30859003
Alignment:
| Q |
111 |
ccataagaagtaactttcacaatctgttaaagcacaagctacttcctctaattgttcttcattgagtgatgccaaactaccaaaagaagcataaacaact |
210 |
Q |
| |
|
|||||| ||||||||| |||||||| | ||| | | |||||||||| || |||||| || |||| | ||||| ||| ||||| ||| |||||||||| |
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| T |
30858809 |
ccataaaaagtaacttccacaatctttcaaacaatacgctacttcctttatttgttcctctttgactcttgccatactcccaaatgaaacataaacaaca |
30858908 |
T |
|
| Q |
211 |
gatccttttggcttatcatttagccattccatacattcttcactttggaattgtgttgcaccataatcttcatcatttttaattcgcttgtctaa |
305 |
Q |
| |
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|| | ||||||||||| ||||||||| || | |||||| ||||||| || |||| |||||||||||||||||| ||||||| |||| ||||| |
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| T |
30858909 |
gacctttttggcttattatttagccaatctagacattcatcactttttaactgtgcaacaccataatcttcatcatctttaatttgcttatctaa |
30859003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 13688153 - 13688102
Alignment:
| Q |
187 |
ctaccaaaagaagcataaacaactgatccttttggcttatcatttagccatt |
238 |
Q |
| |
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|||||||| |||||||| |||||||| ||||| ||||||||||| ||||||| |
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| T |
13688153 |
ctaccaaatgaagcatacacaactgaacctttaggcttatcattcagccatt |
13688102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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