View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1845_low_16 (Length: 289)

Name: NF1845_low_16
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1845_low_16
NF1845_low_16
[»] chr7 (4 HSPs)
chr7 (1-271)||(33933821-33934100)
chr7 (15-268)||(33939320-33939577)
chr7 (191-240)||(22388453-22388502)
chr7 (190-240)||(29574585-29574635)
[»] chr8 (2 HSPs)
chr8 (164-240)||(21130672-21130748)
chr8 (190-235)||(6496851-6496896)
[»] chr5 (3 HSPs)
chr5 (152-236)||(38035981-38036065)
chr5 (189-237)||(13781834-13781882)
chr5 (161-237)||(40534262-40534338)
[»] chr2 (4 HSPs)
chr2 (160-240)||(5759505-5759584)
chr2 (157-240)||(44606037-44606120)
chr2 (190-240)||(6993684-6993734)
chr2 (190-240)||(29430818-29430868)
[»] chr3 (3 HSPs)
chr3 (190-240)||(21872255-21872305)
chr3 (155-237)||(45541634-45541716)
chr3 (198-234)||(944629-944665)
[»] chr1 (1 HSPs)
chr1 (190-240)||(49692012-49692062)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 33934100 - 33933821
Alignment:
Q  1 tgctttgtaggtacgtatgctagaaaaattattagggtcgtgtatttt-ccttgtttttatcatagttaggtaatggactaatgggggagttgtttttca 99  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33934100 tgctttgtaggtatgtatgctagaaaaattattagggtcgtgtatttttccttgtttttatcatagttaggtaatggactaatgggggagttgtttttca 33934001  T
Q  100 tttccttagtaat--------actttaggatttggccagttggagatgtattgattctggtttgattgacttatttgagtttatttgttgatacaaatac 191  Q
    |||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33934000 tttccttagtaatttcataatactttaggatttggccagttggagatgtattgattctggtttgattgacttatttgagtttatttgttgatacaaatac 33933901  T
Q  192 ttgtgcgactgtttggtaaaacttatggaaatagcttatgacatgtccaacttatttccatatgctcttgaaggtagctt 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33933900 ttgtgcgactgtttggtaaaacttatggaaatagcttatgacatgtccaacttatttccatatgctcttgaaggtagctt 33933821  T

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Target: chr7; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 33939577 - 33939320
Alignment:
Q  15 gtatgctagaaaaattattagggtcgtgtatttt-ccttgtttttatcatagttaggtaat--ggactaatgggg--gagttgtttttcatttccttagt 109  Q
    |||||||||| || ||||||||||| |||||||| ||||||||||||| ||||||||||||  ||||||||| ||  |||||||||||||||||||| ||    
T  33939577 gtatgctagagaatttattagggtcatgtatttttccttgtttttatcttagttaggtaatatggactaatgtggtggagttgtttttcatttccttggt 33939478  T
Q  110 aat--------actttaggatttggccagttggagatgtattgattctggtttgattgacttatttgagtttatttgttgatacaaatacttgtgcgact 201  Q
    |||        ||||||||||||||||||||||||||||||||  |||| |||||||         ||||||||  |  |||||||||||||||| ||||    
T  33939477 aatttcatattactttaggatttggccagttggagatgtattgtgtctg-tttgatta--------gagtttatcagccgatacaaatacttgtgagact 33939387  T
Q  202 gtttggtaaaacttatggaaatagcttatgacatgtccaacttatttccatatgctcttgaaggtag 268  Q
    ||||| |||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||    
T  33939386 gtttgataaaacttatggaaatagctcatgacatgtctaacttatttccacatgctcttgaaggtag 33939320  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 22388453 - 22388502
Alignment:
Q  191 cttgtgcgactgtttggtaaaacttatggaaatagcttatgacatgtcca 240  Q
    |||||| |||||||||||||| ||||||||||||||||| || |||||||    
T  22388453 cttgtgagactgtttggtaaagcttatggaaatagcttaagatatgtcca 22388502  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 29574585 - 29574635
Alignment:
Q  190 acttgtgcgactgtttggtaaaacttatggaaatagcttatgacatgtcca 240  Q
    ||||||| |||||||| | | |||||||||||| |||||||||||||||||    
T  29574585 acttgtgagactgtttcggagaacttatggaaacagcttatgacatgtcca 29574635  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 21130748 - 21130672
Alignment:
Q  164 atttgagtttatttgttgatacaaatacttgtgcgactgtttggtaaaacttatggaaatagcttatgacatgtcca 240  Q
    ||||||| |||| || ||| | ||||||||||| |||||||||  | | |||||||||||||||| |||||||||||    
T  21130748 atttgagcttatgtgctgacataaatacttgtgagactgtttgagagagcttatggaaatagcttttgacatgtcca 21130672  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 6496851 - 6496896
Alignment:
Q  190 acttgtgcgactgtttggtaaaacttatggaaatagcttatgacat 235  Q
    ||||||| |||||||||| ||| ||||||||||||||||| |||||    
T  6496851 acttgtgtgactgtttgggaaagcttatggaaatagcttaagacat 6496896  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 38035981 - 38036065
Alignment:
Q  152 tttgattgacttatttgagtttatttgttgatacaaatacttgtgcgactgtttggtaaaacttatggaaatagcttatgacatg 236  Q
    |||||| |||||||||||| ||||||||||  | ||| |||||||  ||||||||| | |||||||||||  |||| ||||||||    
T  38035981 tttgatcgacttatttgaggttatttgttggcataaacacttgtgaaactgtttgggagaacttatggaaccagctaatgacatg 38036065  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 13781834 - 13781882
Alignment:
Q  189 tacttgtgcgactgtttggtaaaacttatggaaatagcttatgacatgt 237  Q
    |||||||| |||||||||||| | ||| | |||||||||||||||||||    
T  13781834 tacttgtgagactgtttggtagagcttgtagaaatagcttatgacatgt 13781882  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 40534338 - 40534262
Alignment:
Q  161 cttatttgagtttatttgttgatacaaatacttgtgcgactgtttggtaaaacttatggaaatagcttatgacatgt 237  Q
    |||||||||||||||||  ||| | ||| |||||||  ||||||| | | | ||||||||| |||||||||||||||    
T  40534338 cttatttgagtttatttactgacataaacacttgtgatactgtttaggagagcttatggaagtagcttatgacatgt 40534262  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 5759505 - 5759584
Alignment:
Q  160 acttatttgagtttatttgttgatacaaatacttgtgcgactgtttggtaaaacttatggaaatagcttatgacatgtcca 240  Q
    |||||||||||||||| | ||| || || |||||||| |||||||||| | | |||||||||| |||||| ||||||||||    
T  5759505 acttatttgagtttatctattggtataagtacttgtgagactgtttgggagagcttatggaaacagctta-gacatgtcca 5759584  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 44606037 - 44606120
Alignment:
Q  157 ttgacttatttgagtttatttgttgatacaaatacttgtgcgactgtttggtaaaacttatggaaatagcttatgacatgtcca 240  Q
    ||||||||||||||| | | | |||| | || ||||||| ||||||||||| | |||||||| ||| | |||||||||||||||    
T  44606037 ttgacttatttgagtgtttatattgacataagtacttgtacgactgtttggaagaacttatgaaaacaacttatgacatgtcca 44606120  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 6993684 - 6993734
Alignment:
Q  190 acttgtgcgactgtttggtaaaacttatggaaatagcttatgacatgtcca 240  Q
    ||||||| ||||||||| || |||||||| |||||||||||| ||||||||    
T  6993684 acttgtgagactgtttgatagaacttatgtaaatagcttatggcatgtcca 6993734  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 29430868 - 29430818
Alignment:
Q  190 acttgtgcgactgtttggtaaaacttatggaaatagcttatgacatgtcca 240  Q
    ||||||| |||| ||||| | |||||||| |||||||||||||||||||||    
T  29430868 acttgtgggactatttggaagaacttatgaaaatagcttatgacatgtcca 29430818  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 21872255 - 21872305
Alignment:
Q  190 acttgtgcgactgtttggtaaaacttatggaaatagcttatgacatgtcca 240  Q
    ||||||| |||||||||| ||| ||| || |||||||||||||||||||||    
T  21872255 acttgtgagactgtttggaaaagcttttgaaaatagcttatgacatgtcca 21872305  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 45541716 - 45541634
Alignment:
Q  155 gattgacttatttgagtttatttgttgatacaaatacttgtgcgactgtttggtaaaacttatggaaatagcttatgacatgt 237  Q
    |||||||||||||||| ||||||  || || ||| ||||||  |||||||| | | |||||||| ||| ||||||||||||||    
T  45541716 gattgacttatttgagcttatttaatggtataaacacttgtaagactgtttagaagaacttatgaaaacagcttatgacatgt 45541634  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 944665 - 944629
Alignment:
Q  198 gactgtttggtaaaacttatggaaatagcttatgaca 234  Q
    |||||||||| |||||||||| |||||||||||||||    
T  944665 gactgtttgggaaaacttatgaaaatagcttatgaca 944629  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 49692012 - 49692062
Alignment:
Q  190 acttgtgcgactgtttggtaaaacttatggaaatagcttatgacatgtcca 240  Q
    ||||||| |||||||||  | |||||||| |||||||||||||||||||||    
T  49692012 acttgtgagactgtttgagagaacttatgaaaatagcttatgacatgtcca 49692062  T

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