View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1845_low_2 (Length: 530)
Name: NF1845_low_2
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1845_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Original strand, 2608175 - 2608675
Alignment:
| Q |
19 |
gacccatattcccaacttttctacaaatcaccattccatatccaagttctctatacaaacaaataacatcatcatcacttacacacttaacaccctccca |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2608175 |
gacccatattcgcaacttttctacaaatcaccattccatatccaagttctctatacaaacaaattacatcatcatcacttacacacttaacaccctccca |
2608274 |
T |
|
| Q |
119 |
atttctcttcccacacaacaatctcacccctaattcacttggcatctcatcaaccaaacaccatttatccccttcactcatttcccaaacacaaacattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2608275 |
atttctcttcccacacaacaatctcacccctaattcacttggcatctcatcaaccaaacaccatttatccccttcactcatttcccaaacacaaacattt |
2608374 |
T |
|
| Q |
219 |
ccaccacacgtgccaccaatcaatcccaaccctccattccatctcacaagtgttgcaaattcaagcctatccgcaagaggtacactaaattctctccaac |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |
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| T |
2608375 |
ccaccacacgtgccaccaatcaatcccaaccctccattccatctcacaagtgtagcaaattcaagcctatctgcaagaggcacactaaattccctccaac |
2608474 |
T |
|
| Q |
319 |
aattattcccaacatcaaatcccatcacattatatgccctagccgaggtaatccaatacaacgttgttgttcttcttccctctatacacacattctcatt |
418 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
2608475 |
aattattcccaacatcaaatcccattacactatatgccctagctgaggttatccaatacaatgttgttgttcttgttccctctatacacacattctcatt |
2608574 |
T |
|
| Q |
419 |
tggtgtccaaaccgttagcctaaccgaaaattcaaccggcatcgatccaacgattttccacgtgtcaatacaagattcatatatttcaacggtcggttca |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2608575 |
tggtgtccaaaccgttagcctaaccgaaaattcaaccggcatcgatccaacgattttccacgtgtcaatacaagattcatatatttcaacggtcggttca |
2608674 |
T |
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| Q |
519 |
t |
519 |
Q |
| |
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| T |
2608675 |
t |
2608675 |
T |
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