View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1845_low_20 (Length: 252)

Name: NF1845_low_20
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1845_low_20
NF1845_low_20
[»] chr3 (7 HSPs)
chr3 (18-252)||(27632300-27632534)
chr3 (18-158)||(34516342-34516482)
chr3 (151-252)||(34517225-34517326)
chr3 (18-113)||(34525538-34525633)
chr3 (151-251)||(27616853-27616953)
chr3 (151-252)||(34505638-34505739)
chr3 (151-243)||(34526410-34526502)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 27632300 - 27632534
Alignment:
Q  18 attaatgtgtataaagtactcaaaatcaatgcagaaaatagttaatagagaatgtttggaatgtattacaggttaccgctttagaattcagatattgcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27632300 attaatgtgtataaagtactcaaaatcaatgcagaaaatagttaatagagaatgtttggaatgtattacaggtaaccgctttagaattcagatattgcta 27632399  T
Q  118 gaattaaataaacatgttctaagagatgaagagtatagactgcaaaggatcatacctttttggaatggatgtgtcttctgcaatgacaacatctgaggca 217  Q
    ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27632400 gaaataaataaacatgttctaagagacgaagagtatagactgcaaaggatcatacctttttggaatggatgtgtcttctgcaatgacaacatctgaggca 27632499  T
Q  218 ttgctgatggtatcttcttcatctgagagcatatc 252  Q
    |||||||||||||||||||||||||||||||||||    
T  27632500 ttgctgatggtatcttcttcatctgagagcatatc 27632534  T

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Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 34516342 - 34516482
Alignment:
Q  18 attaatgtgtataaagtactcaaaatcaatgcagaaaatagttaatagagaatgtttggaatgtattacaggttaccgctttagaattcagatattgcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34516342 attaatgtgtataaagtactcaaaatcaatgcagaaaatagttaatagagaatgtttggaatgtattacaggttaccgctttagaattcagatattgcta 34516441  T
Q  118 gaattaaataaacatgttctaagagatgaagagtatagact 158  Q
    ||| ||||||||| |||||||||||| ||||||||||||||    
T  34516442 gaaataaataaacttgttctaagagacgaagagtatagact 34516482  T

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Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 34517225 - 34517326
Alignment:
Q  151 tatagactgcaaaggatcatacctttttggaatggatgtgtcttctgcaatgacaacatctgaggcattgctgatggtatcttcttcatctgagagcata 250  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34517225 tatagactgcaaaggatcatacctttttgcaatggatgtgtcttctgcaatgacaacatctgaggcattgctgatggtatcttcttcatctgagagcata 34517324  T
Q  251 tc 252  Q
    ||    
T  34517325 tc 34517326  T

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Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 34525538 - 34525633
Alignment:
Q  18 attaatgtgtataaagtactcaaaatcaatgcagaaaatagttaatagagaatgtttggaatgtattacaggttaccgctttagaattcagatatt 113  Q
    |||||||||||||||||||||||||||||| ||  ||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  34525538 attaatgtgtataaagtactcaaaatcaatacaacaaatatttaaaagagaatgtttggaatgtattacaggttaccactttagaattcaaatatt 34525633  T

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Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 27616853 - 27616953
Alignment:
Q  151 tatagactgcaaaggatcatacctttttggaatggatgtgtcttctgcaatgacaacatctgaggcattgctgatggtatcttcttcatctgagagcata 250  Q
    |||||||| ||||||| |||||||||||| |||||||||||||| | ||| |||||||||||||||||| ||||| |||||||||||||||||||| |||    
T  27616853 tatagacttcaaaggaccatacctttttgcaatggatgtgtctttttcaacgacaacatctgaggcatttctgattgtatcttcttcatctgagagaata 27616952  T
Q  251 t 251  Q
    |    
T  27616953 t 27616953  T

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Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 34505638 - 34505739
Alignment:
Q  151 tatagactgcaaaggatcatacctttttggaatggatgtgtcttctgcaatgacaacatctgaggcattgctgatggtatcttcttcatctgagagcata 250  Q
    |||||||| ||||||| |||||||||||| |||||||||||| | | ||| |||||||||||||||||| ||||| |||||||||||||||||||| |||    
T  34505638 tatagacttcaaaggaccatacctttttgcaatggatgtgtcgttttcaacgacaacatctgaggcatttctgattgtatcttcttcatctgagagaata 34505737  T
Q  251 tc 252  Q
    ||    
T  34505738 tc 34505739  T

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Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 34526410 - 34526502
Alignment:
Q  151 tatagactgcaaaggatcatacctttttggaatggatgtgtcttctgcaatgacaacatctgaggcattgctgatggtatcttcttcatctga 243  Q
    |||||| |||||||||  ||||||||||| |||||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||||    
T  34526410 tatagaatgcaaaggacaatacctttttgcaatggatgtgtcgtttgcaacgacatcatctgaggcattgctgatggtatcttcttcatctga 34526502  T

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