View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1845_low_21 (Length: 252)
Name: NF1845_low_21
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1845_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 3598635 - 3598866
Alignment:
| Q |
12 |
atgaactaacaactcatgaaaataatctattcaaaagagaagagtaacta------caatcctccttagagcatcctaaaatctctagaaaaggattaat |
105 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598635 |
atgaactaacaactcatgaaaataaactattcaaaagagaagagtaaccaagtatccaatcctccttagagcatcctaaaatctctagaaaaggattaat |
3598734 |
T |
|
| Q |
106 |
aatttaggacaataattattaaggccttccgcaatttgtgtttctaaagctgcagcaagcc-nnnnnnnncttcagcaatctcgatcaacacacaatata |
204 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3598735 |
aatttaggacaataattattaaggccatctgcaatttgtgtttctaaagctgcagcaagcctttttttttcttcagcaatctcgatcaacacacaatata |
3598834 |
T |
|
| Q |
205 |
gagagggtagacacaatcacatcagtttaatc |
236 |
Q |
| |
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||||||||||||||| |||||||||||||||| |
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| T |
3598835 |
gagagggtagacacagtcacatcagtttaatc |
3598866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 4356384 - 4356335
Alignment:
| Q |
12 |
atgaactaacaactcatgaaaataatctattcaaaagagaagagtaacta |
61 |
Q |
| |
|
||||||||||||||| ||||||||| | |||||||||||||||||||||| |
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|
| T |
4356384 |
atgaactaacaactcctgaaaataaacaattcaaaagagaagagtaacta |
4356335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 45221470 - 45221519
Alignment:
| Q |
12 |
atgaactaacaactcatgaaaataatctattcaaaagagaagagtaacta |
61 |
Q |
| |
|
||||||||| ||||||||||||||| | |||||||||||||||||||||| |
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| T |
45221470 |
atgaactaaaaactcatgaaaataaacaattcaaaagagaagagtaacta |
45221519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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