View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1845_low_24 (Length: 250)
Name: NF1845_low_24
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1845_low_24 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 49158234 - 49158475
Alignment:
| Q |
9 |
agcaaaggtggtagcaggagcaggatctgtcaagtcatcagcaggcacatagatggcttggacagaggtaattgaacccttcttggtggttgtaatacgc |
108 |
Q |
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| T |
49158234 |
agcaaaggtggtagcaggagcaggatctgtcaagtcatcagcaggcacatagatggcttggacagaggtaattgaacccttcttggtggttgtaatacgc |
49158333 |
T |
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| Q |
109 |
tcttgaagacctccaagatcagtagacaatgttggttgataaccaacggcagatgggatgcgaccaagcaatgcagacacctctgagtttgcctacaatt |
208 |
Q |
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| T |
49158334 |
tcttgaagacctccaagatcagtagacaacgttggttgataaccaacggcagatgggatgcgaccaagcaatgcagacacctctgagtttgcctacaatt |
49158433 |
T |
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| Q |
209 |
gcatatgcatcatatatcacattataaatagaatgtaattca |
250 |
Q |
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| T |
49158434 |
gcatatgcatcatatatcacattataaatagaatgtaattca |
49158475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 49153304 - 49153526
Alignment:
| Q |
9 |
agcaaaggtggtagcaggagcaggatctgtcaagtcatcagcaggcacatagatggcttggacagaggtaattgaacccttcttggtggttgtaatacgc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49153304 |
agcaaaggtggtagcaggagcaggatctgtcaagtcatcagcaggcacatagatagcctggacagatgtaattgaacccttcttggtggttgtaatacgc |
49153403 |
T |
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| Q |
109 |
tcttgaagacctccaagatcagtagacaatgttggttgataaccaacggcagatgggatgcgaccaagcaatgcagacacctctgagtttgcctacaatt |
208 |
Q |
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| T |
49153404 |
tcttgaagacctccaagatcagtagacaatgttggttggtaaccaaccgcagatggaatacgaccaagcagggcagacacctctgagttagcctacagtg |
49153503 |
T |
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| Q |
209 |
gcat-atgcatcatatatcacat |
230 |
Q |
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| T |
49153504 |
acatcaggcatcatatatcacat |
49153526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 27960615 - 27960569
Alignment:
| Q |
133 |
gacaatgttggttgataaccaacggcagatgggatgcgaccaagcaa |
179 |
Q |
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| T |
27960615 |
gacagtgttggttgataaccaacagccgatgggatacgaccaagcaa |
27960569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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