View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1845_low_25 (Length: 250)

Name: NF1845_low_25
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1845_low_25
NF1845_low_25
[»] chr3 (13 HSPs)
chr3 (1-240)||(27632726-27632965)
chr3 (1-232)||(34517518-34517749)
chr3 (35-229)||(34478020-34478214)
chr3 (1-240)||(34505934-34506154)
chr3 (1-240)||(27617149-27617369)
chr3 (67-205)||(34526708-34526846)
chr3 (49-217)||(34462991-34463159)
chr3 (117-225)||(34474184-34474292)
chr3 (162-237)||(34512162-34512237)
chr3 (162-237)||(27626390-27626465)
chr3 (6-74)||(34375769-34375837)
chr3 (6-96)||(27626245-27626333)
chr3 (183-226)||(34375681-34375724)
[»] chr7 (1 HSPs)
chr7 (35-236)||(15741143-15741341)
[»] chr6 (1 HSPs)
chr6 (35-236)||(1575035-1575233)
[»] chr2 (3 HSPs)
chr2 (13-222)||(10533622-10533829)
chr2 (49-222)||(10526843-10527014)
chr2 (185-229)||(10531311-10531355)
[»] scaffold1215 (1 HSPs)
scaffold1215 (13-222)||(807-1014)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 27632726 - 27632965
Alignment:
Q  1 attgggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27632726 attgggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgag 27632825  T
Q  101 atttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27632826 atttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcagcacaaatctgatataggaacagtgaagcagtcactc 27632925  T
Q  201 agataccaattttcaattataactaagtacaatacctatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27632926 agataccaattttcaattataactaagtacaatacctatg 27632965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 34517518 - 34517749
Alignment:
Q  1 attgggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34517518 attgggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgag 34517617  T
Q  101 atttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34517618 atttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaagacaaatctgatataggaacagtgaagcagtcactc 34517717  T
Q  201 agataccaattttcaattataactaagtacaa 232  Q
    ||||||||||||||||||||||||||||||||    
T  34517718 agataccaattttcaattataactaagtacaa 34517749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 35 - 229
Target Start/End: Original strand, 34478020 - 34478214
Alignment:
Q  35 gaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattg 134  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||  |||||||||||| | |||  | | |||  ||||||||||||||||||| |||    
T  34478020 gaaactgagctatgttacaattaaagcacataaatcacaagataagcaacagatacctttggcgaggatggtaagcgtgagttctgcaccatcctggttg 34478119  T
Q  135 catcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagta 229  Q
    ||||||||||||||| || ||  |||  ||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||    
T  34478120 catcctcccctaagctttcatcacacaaaggacaaatctgatataggaacagtgatgcagtcactcagatatcaaatttcaattataactaagta 34478214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 34505934 - 34506154
Alignment:
Q  1 attgggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgag 100  Q
    ||||||||| |||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||                   ||||||||||||    
T  34505934 attgggttagataagaatcaaatacttctacgcagaaactgagctattttacaattaaagcacataaat-------------------accttttgtgag 34506014  T
Q  101 atttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactc 200  Q
    ||| ||||| ||||||||| ||||||||||||||||||||||||||||| || ||  ||| |||||||||||||||||||||||||||||||| ||| |     
T  34506015 attgggaagcttgagttcttcaccatcctgattgcatcctcccctaagctttcatcacacacaggacaaatctgatataggaacagtgaagcattcattt 34506114  T
Q  201 agataccaattttcaattataactaagtacaatacctatg 240  Q
     |||| ||| |||||| |||||  ||||||||||||||||    
T  34506115 cgatatcaaatttcaaatataatcaagtacaatacctatg 34506154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 27617149 - 27617369
Alignment:
Q  1 attgggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgag 100  Q
    ||||||||| |||||||||||||||||||| ||||||||| ||| ||||||| ||||||||||||||||                   ||||||||||||    
T  27617149 attgggttagataagaatcaaatacttctacgcagaaactgagctattttactattaaagcacataaat-------------------accttttgtgag 27617229  T
Q  101 atttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactc 200  Q
    ||| ||||| ||||||||| ||||||||||||||||||||||||||||| || ||  ||| |||||||||||||||||||||||||||||||| ||| |     
T  27617230 attgggaagcttgagttcttcaccatcctgattgcatcctcccctaagctttcatcacacacaggacaaatctgatataggaacagtgaagcattcattt 27617329  T
Q  201 agataccaattttcaattataactaagtacaatacctatg 240  Q
     |||| ||| |||||| |||||  ||||||||||||||||    
T  27617330 cgatatcaaatttcaaatataatcaagtacaatacctatg 27617369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 67 - 205
Target Start/End: Original strand, 34526708 - 34526846
Alignment:
Q  67 aatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcagga 166  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||| ||| |||||| |||||||||||||||||||||||||||| || ||  ||| |||||    
T  34526708 aatcacaagataatttacagataccttctgtgagattgggaagcttgtgttctgaaccatcctgattgcatcctcccctaagctttcatcacacacagga 34526807  T
Q  167 caaatctgatataggaacagtgaagcagtcactcagata 205  Q
    ||| |||||||||||||||||| |||||||| |||||||    
T  34526808 caattctgatataggaacagtgtagcagtcattcagata 34526846  T

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Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 217
Target Start/End: Original strand, 34462991 - 34463159
Alignment:
Q  49 ttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaag 148  Q
    |||||||||||||||||| |||||||||||||  |||||||||||| |   |  | ||||| ||||  ||||||   | |||||||| |||||||||||     
T  34462991 ttacaattaaagcacatacatcacaagataagcaacagatacctttggcacggctgggaagcttgaactctgcatatttctgattgcctcctcccctaaa 34463090  T
Q  149 cctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaat 217  Q
      || || |||| |||||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||    
T  34463091 ttttcatggcacacaggacaaatctgatatatgaacagtgaagcagtcattcagatatcaaatttcaat 34463159  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 117 - 225
Target Start/End: Original strand, 34474184 - 34474292
Alignment:
Q  117 tctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaa 216  Q
    ||||||||||||||||| | |||||||| ||   || || |||| ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||| |     
T  34474184 tctgcaccatcctgatttcctcctccccgaaattttcatggcacacaggataaatctgatataggagcagtgaagcagtcattcagatatcaaatttaag 34474283  T
Q  217 ttataacta 225  Q
    |||||||||    
T  34474284 ttataacta 34474292  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 34512162 - 34512237
Alignment:
Q  162 caggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagtacaatacct 237  Q
    ||||||| |||||||||||| ||| ||||||||||| ||| ||| ||| ||||||||||| |||||||| ||||||    
T  34512162 caggacatatctgatatagggacattgaagcagtcattcaaatatcaaatttcaattatatctaagtactatacct 34512237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 27626390 - 27626465
Alignment:
Q  162 caggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagtacaatacct 237  Q
    ||||||| |||||||||||| ||| || |||||||| ||| ||| ||| ||||||||||| |||||||| ||||||    
T  27626390 caggacatatctgatatagggacattgtagcagtcattcaaatatcaaatttcaattatatctaagtactatacct 27626465  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 34375837 - 34375769
Alignment:
Q  6 gttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaa 74  Q
    |||| |||||||||||||| | | | ||||||||| ||| |||||||||| |||| |||||||||||||    
T  34375837 gttagataagaatcaaatattccgacgcagaaactgagctattttacaatcaaagaacataaatcacaa 34375769  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 27626245 - 27626333
Alignment:
Q  6 gttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttg 96  Q
    |||| ||||||||| |||||| |||  | ||| || ||| ||||||||||||||  |||||||||||||||||||  ||| ||||||||||    
T  27626245 gttacataagaatccaatactcctacccggaagctgagctattttacaattaaa--acataaatcacaagataagcaacatataccttttg 27626333  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 34375724 - 34375681
Alignment:
Q  183 acagtgaagcagtcactcagataccaattttcaattataactaa 226  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||    
T  34375724 acagtaaagcagtcattcagataccaaatttcaattataactaa 34375681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 35 - 236
Target Start/End: Complemental strand, 15741341 - 15741143
Alignment:
Q  35 gaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattg 134  Q
    |||||||| | || |||||||| ||||||||||||||||||| | || ||| |||||||| | |||||| ||||| ||||  |||||||||||||||||     
T  15741341 gaaactaacctatgttacaatttaagcacataaatcacaagacaggtaacaaatacctttggcgagattgggaagcttgaactctgcaccatcctgatta 15741242  T
Q  135 catcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagtacaata 234  Q
    |||||||||||||   |||||  ||| |||||||||||||  |||||||||||||| | | || ||||||| ||| |||||||||||||||||||| |||    
T  15741241 catcctcccctaaatttttatcacacacaggacaaatctg--ataggaacagtgaa-cggccagtcagatatcaaatttcaattataactaagtactata 15741145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 35 - 236
Target Start/End: Original strand, 1575035 - 1575233
Alignment:
Q  35 gaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattg 134  Q
    |||||||| | || |||||||| ||||||||||||||||||| | || ||| |||||||| | |||||| ||||| ||||  |||||||||||||||||     
T  1575035 gaaactaacctatgttacaatttaagcacataaatcacaagacaggtaacaaatacctttggcgagattgggaagcttgaactctgcaccatcctgatta 1575134  T
Q  135 catcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagtacaata 234  Q
    |||||||||||||   |||||  ||| |||||||||||||  |||||||||||||| | | || ||||||| ||| |||||||||||||||||||| |||    
T  1575135 catcctcccctaaatttttatcacacacaggacaaatctg--ataggaacagtgaa-cggccagtcagatatcaaatttcaattataactaagtactata 1575231  T

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Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 10533622 - 10533829
Alignment:
Q  13 aagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagatt 112  Q
    |||||||| ||||| |||  | |||||||| | || |||||||| ||||||||||||||||||| |||| |||||||||||| | ||  || |||   ||    
T  10533622 aagaatcagatactcctacactgaaactaacctatgttacaatttaagcacataaatcacaagacaagtaacagatacctttggcgatgttgggagtctt 10533721  T
Q  113 gagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattt 212  Q
    ||  ||||||||||||||||| ||||||||||||||  |||||  ||| |||||||||||||  ||||||||||| || ||| || ||||||| ||| ||    
T  10533722 gaactctgcaccatcctgattacatcctcccctaagtttttatcacacacaggacaaatctg--ataggaacagtaaaacagccattcagatatcaaatt 10533819  T
Q  213 tcaattataa 222  Q
    ||||||||||    
T  10533820 tcaattataa 10533829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 222
Target Start/End: Original strand, 10526843 - 10527014
Alignment:
Q  49 ttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaag 148  Q
    |||||||| ||||||||||||||||||| |||| |||||||||||| | ||  || |||   ||||  ||||||||||||||||| ||||||||| |||     
T  10526843 ttacaatttaagcacataaatcacaagacaagtaacagatacctttggcgatgttgggagtcttgaactctgcaccatcctgattacatcctcccttaaa 10526942  T
Q  149 cctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataa 222  Q
      |||||  ||| |||||||||||||  ||||||||||| || ||| || ||||||| ||| ||||||||||||    
T  10526943 tttttatcacacacaggacaaatctg--ataggaacagtaaaacagccattcagatatcaaatttcaattataa 10527014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 10531311 - 10531355
Alignment:
Q  185 agtgaagcagtcactcagataccaattttcaattataactaagta 229  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||    
T  10531311 agtgaagcagtcattcagataccgaatttcaattataactaagta 10531355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 807 - 1014
Alignment:
Q  13 aagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagatt 112  Q
    |||||||| ||||| |||  | |||||||| | || |||||||| ||||||||||||||||||| |||| |||||||||||| | ||  || |||   ||    
T  807 aagaatcagatactcctacactgaaactaacctatgttacaatttaagcacataaatcacaagacaagtaacagatacctttggcgatgttgggagtctt 906  T
Q  113 gagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattt 212  Q
    ||  ||||||||||||||||| ||||||||| |||   |||||  ||| |||||||||||||  ||||||||||| || ||| || ||||||| ||| ||    
T  907 gaactctgcaccatcctgattacatcctcccttaaatttttatcacacacaggacaaatctg--ataggaacagtaaaacagccattcagatatcaaatt 1004  T
Q  213 tcaattataa 222  Q
    ||||||||||    
T  1005 tcaattataa 1014  T

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