View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1845_low_28 (Length: 243)

Name: NF1845_low_28
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1845_low_28
NF1845_low_28
[»] chr5 (9 HSPs)
chr5 (19-236)||(30005829-30006046)
chr5 (19-236)||(30045108-30045325)
chr5 (19-207)||(29952006-29952194)
chr5 (19-208)||(29963110-29963299)
chr5 (19-208)||(30011499-30011688)
chr5 (19-215)||(29943877-29944073)
chr5 (19-229)||(30070938-30071148)
chr5 (19-230)||(29999397-29999608)
chr5 (23-215)||(29990708-29990900)
[»] chr8 (1 HSPs)
chr8 (110-210)||(43805738-43805838)


Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 30006046 - 30005829
Alignment:
Q  19 actaacattcacaacctcaccctccaaagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaactttt 118  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30006046 actaacattcacaacctcaccctccaaggcagctttctccaaagatataaccaaaacatccaacttctccttcctaataggaccaaacatctcaactttt 30005947  T
Q  119 gaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataagacatgagat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30005946 gaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataagacatgagat 30005847  T
Q  219 ctgatccttgaacctttg 236  Q
    ||||||||||||||||||    
T  30005846 ctgatccttgaacctttg 30005829  T

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Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 30045108 - 30045325
Alignment:
Q  19 actaacattcacaacctcaccctccaaagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaactttt 118  Q
    |||||||||||||||||||||  ||||||||||||||| |||||  |||||||||| |  ||||| ||| || |||||||||||| ||||||||||||||    
T  30045108 actaacattcacaacctcaccaaccaaagcagctttcttcaaagtgttaaccaaaatactcaactcctcttttctaataggaccagacatctcaactttt 30045207  T
Q  119 gaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataagacatgagat 218  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  30045208 gaagcactaagaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcacaaaaagccatccctttggaaccataagacatgagct 30045307  T
Q  219 ctgatccttgaacctttg 236  Q
    | |||||||||| |||||    
T  30045308 cagatccttgaatctttg 30045325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 29952194 - 29952006
Alignment:
Q  19 actaacattcacaacctcaccctccaaagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaactttt 118  Q
    |||||||||||||||||||| | ||||||||||||||||||| || |||| ||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  29952194 actaacattcacaacctcactcaccaaagcagctttctccaatgacttaatcaaaacatccaacttttccttcctaatagaaccaaacatctcaactttt 29952095  T
Q  119 gaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccata 207  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  29952094 gaagcactaagaagttttaaagtgcaaagtttcctcacactacgccaataaggaccatacttagaaaaagccaaccctttggaaccata 29952006  T

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Target: chr5; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 29963299 - 29963110
Alignment:
Q  19 actaacattcacaacctcaccctccaaagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaactttt 118  Q
    |||||||||||||||||||||  ||||| || ||||||| || || ||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  29963299 actaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaactccttcttcctaataggaccaaacatctcaactttt 29963200  T
Q  119 gaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataa 208  Q
    |||||||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29963199 gaagcactaagaagtttcaaagtgcaaagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttggaaccataa 29963110  T

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Target: chr5; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 30011499 - 30011688
Alignment:
Q  19 actaacattcacaacctcaccctccaaagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaactttt 118  Q
    |||||||||||||||||||||  ||||| || ||||||| || || ||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  30011499 actaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaactccttcttcctaataggaccaaacatctcaactttt 30011598  T
Q  119 gaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataa 208  Q
    |||||||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30011599 gaagcactaagaagtttcaaagtgcaaagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttggaaccataa 30011688  T

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Target: chr5; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 29944073 - 29943877
Alignment:
Q  19 actaacattcacaacctcaccctccaaagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaactttt 118  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29944073 actaacattcacaacctcaccctccagagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaactttc 29943974  T
Q  119 gaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataagacatga 215  Q
    |||||||||| ||||||  |||| |||| ||| |||||||||||||||||||   | |||| |||||| |||| ||||||| |||||||||||||||    
T  29943973 gaagcactaagaagttttgaagtacaaagttttctcacactacgccaataagagtcgtacttagaaaacgccaaccctttgcaaccataagacatga 29943877  T

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Target: chr5; HSP #7
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 30070938 - 30071148
Alignment:
Q  19 actaacattcacaacctcaccctccaaagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaactttt 118  Q
    |||||||||||||||||||||  ||||||||||||||| |||||  |||||||||| |  ||||| ||| || |||||||||||| ||||||||||||||    
T  30070938 actaacattcacaacctcaccaaccaaagcagctttcttcaaagtgttaaccaaaatactcaactcctcttttctaataggaccagacatctcaactttt 30071037  T
Q  119 gaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataagacatgagat 218  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||  ||||||| |    
T  30071038 gaagcactaagaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatagtcagaaaaaactatccctttggaaccatataacatgagct 30071137  T
Q  219 ctgatccttga 229  Q
    | |||||||||    
T  30071138 cagatccttga 30071148  T

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Target: chr5; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 29999608 - 29999397
Alignment:
Q  19 actaacattcacaacctcaccctccaaagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaactttt 118  Q
    |||||||||||||||||||||  |||||| |||||||| |||||  |||||||||||| |||||| ||| || |||||||||||  || |||||||||||    
T  29999608 actaacattcacaacctcacctaccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccgacttctcaactttt 29999509  T
Q  119 gaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataagacatgagat 218  Q
    |||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||| |||||||| |||||||| |    
T  29999508 gaagcactaagaagtttcaaagtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttagaaccataggacatgagct 29999409  T
Q  219 ctgatccttgaa 230  Q
    ||||||||||||    
T  29999408 ctgatccttgaa 29999397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 215
Target Start/End: Complemental strand, 29990900 - 29990708
Alignment:
Q  23 acattcacaacctcaccctccaaagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaacttttgaag 122  Q
    |||||||||||||||||  |||||| |||||| | |||||  |||||||||| | |||||| |||  | |||||||||||  || |||||||||||||||    
T  29990900 acattcacaacctcacctaccaaagaagcttttttcaaagtgttaaccaaaatacccaactcctctgttctaataggacccgacttctcaacttttgaag 29990801  T
Q  123 cactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataagacatga 215  Q
    |||||| ||||||||||||||| | |||| | |||||||||||||||||  | |||| |||||| |||| ||||||| |||||||||| ||||    
T  29990800 cactaagaagtttcaaagtgcagagtttctttacactacgccaataagggtcgtacttagaaaacgccaaccctttgcaaccataagatatga 29990708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 43805838 - 43805738
Alignment:
Q  110 tcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataag 209  Q
    |||||||| |||||||| ||||| | |||||||||||  ||||||| | |||||||||| | ||| || |||| |||| ||| |||||| ||||||||||    
T  43805838 tcaactttagaagcacttaaaagctgcaaagtgcaaaccttcctcatattacgccaataggcaccgtattcagcaaaaaccaaccctttagaaccataag 43805739  T
Q  210 a 210  Q
    |    
T  43805738 a 43805738  T

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