View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1845_low_32 (Length: 238)
Name: NF1845_low_32
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1845_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26909217 - 26908995
Alignment:
| Q |
1 |
taatataaatcaatctccataaatatactatattatccattgaaaaacaattttggtttgtgtgtctttcttatgacttatttctccatttccattttta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
26909217 |
taatataaatcaatctccataaatatactctattatctattgaaaaacaattttggtttgtgtgtttttcttatgacctatttctccatttccattttta |
26909118 |
T |
|
| Q |
101 |
aggatggattagtttgcaggaacg-ttcactgttgttttcttctgtatgttgatattgaacattgaatatattattttcatctaatttgttcattgcaca |
199 |
Q |
| |
|
|| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26909117 |
agtcaggattagtttgcaggaacgtttcgctgttgttttcttctgtatgttgatatcgaacattgaatatattattttcatctaatttgttcattgcaca |
26909018 |
T |
|
| Q |
200 |
gaaaaattattcatactaaatat |
222 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
26909017 |
gaaaaattattcatactaaatat |
26908995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University