View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1845_low_34 (Length: 236)
Name: NF1845_low_34
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1845_low_34 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 29 - 236
Target Start/End: Complemental strand, 29422588 - 29422379
Alignment:
| Q |
29 |
tgttaccttttagatctagtaacatttatcatttgttaggtaaagcctgtcacctgtgttactgagtagtttcagtaacccctgag--tattattagtaa |
126 |
Q |
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| T |
29422588 |
tgttactttttagatctagtaacatttgtcatttgttaggtaaagcctgtcgactgtgttactgagtagtttcagtaacccctgagagtattattagtaa |
29422489 |
T |
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| Q |
127 |
cattcaaagagtgttactatttagtagctaattcgcaaccaatctctataaaacaattttagctaattctattgggataaacagcaataaaaattgaata |
226 |
Q |
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| T |
29422488 |
cattcaaagagtgttaccatttagtagctaattcacaaccaatctctataaaacaattttagttaattctattgggataaacagcaataaaaattgaata |
29422389 |
T |
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| Q |
227 |
ttcctttcac |
236 |
Q |
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|||||||||| |
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| T |
29422388 |
ttcctttcac |
29422379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 29458394 - 29458303
Alignment:
| Q |
136 |
agtgttactatttagtagctaattcgcaaccaatctctataaaacaattttagctaattctattgggataaacagcaataaaaattgaatat |
227 |
Q |
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|||||||| ||||||| |||||||||||||| |||||| ||||||||||||||||||| | |||||||||||| ||| ||| ||||||||| |
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| T |
29458394 |
agtgttaccgtttagtaactaattcgcaaccattctctagaaaacaattttagctaattttgttgggataaacaacaacaaagattgaatat |
29458303 |
T |
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