View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1845_low_35 (Length: 236)
Name: NF1845_low_35
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1845_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 29422200 - 29421979
Alignment:
| Q |
1 |
aactaaaatcttaaccacaattaccatttaaatacaaactattaatacagatactcaatctataatctgaaattaacctcaaaatgttattttcagtaaa |
100 |
Q |
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| T |
29422200 |
aactaaaatgttagccacaattaccatttaaatacaaactattaatacagatactcaatctataatctgaaattaacctcaaaatgttattttcagtaaa |
29422101 |
T |
|
| Q |
101 |
gcttaattgcacaccttctgatacattatgtaattgaaaataaaatacttggtgagctggttttctgaccatagattttggcgaagttgcattctgattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29422100 |
gcttaattgcacaccttctgatacattatgtaattgaaaataaaatacttagtgagctgcttttctgaccatagattttggcgaagttgcattctgattt |
29422001 |
T |
|
| Q |
201 |
ctgaaatatatttggtaaattt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
29422000 |
ctgaaatatatttggtaaattt |
29421979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 29458063 - 29457944
Alignment:
| Q |
24 |
ccatttaaatacaaactattaatacagatactcaatctataatctgaaattaacctcaaaatgttattttcagtaaagcttaattgcacaccttctgata |
123 |
Q |
| |
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|||| |||||| |||||||||||||| |||||||||||| || ||||||||||||||||||||||||| |||||| | |||| |||||||||| || |
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| T |
29458063 |
ccatctaaatataaactattaatacaaatactcaatcta--atatgaaattaacctcaaaatgttattt---gtaaagttcaattacacaccttctcgta |
29457969 |
T |
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| Q |
124 |
cattatgtaattgaaaataaaatac |
148 |
Q |
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|||| |||||||||||||||||||| |
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| T |
29457968 |
cattctgtaattgaaaataaaatac |
29457944 |
T |
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