View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1845_low_4 (Length: 487)
Name: NF1845_low_4
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1845_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 97 - 476
Target Start/End: Original strand, 182869 - 183248
Alignment:
| Q |
97 |
gattaaataggagtatttttgtaacagtaataaacaggatctcatgtgaaaggtatataatggaccatcatttaattgattttatagccaatcagttcat |
196 |
Q |
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| T |
182869 |
gattaaataggagtatttttgtaacagtaataaacaggatctcatgtgaaagttatataatgggccattatttaattgattttatagccaatcagttcat |
182968 |
T |
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| Q |
197 |
ataaaagtatgcaatcctaacaaactatctatttgattaatgagtgaagatacaatttaattcagtctctaacaataaataaaacacaaattaatctatg |
296 |
Q |
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| T |
182969 |
ataaaagtatgcaatcctaacaaactatctatttgattaatgagtgaagatacaatttaattcagtctctaacaataaataaaacacaaattaatctatg |
183068 |
T |
|
| Q |
297 |
acattttcatattcgggataaattagtccataaatcattgtattatagagactaatttggatttatgttttgtcaagtagtacttaattctctaagaaaa |
396 |
Q |
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| T |
183069 |
acattttcatattcgggataaattagtccataaatcattgtattatagagactaatttggatttatgttttgtcaagtagtacttaattctctaagaaaa |
183168 |
T |
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| Q |
397 |
ttatgagggttgtgtattaatggtgaagactatagagtagttgggtatggttgacaacacttattctctcattgatgatg |
476 |
Q |
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| T |
183169 |
ttatgagggttgtgtattaatggtgaagactatagagtagttgggtatggttgacaacacttattctctcattgatgatg |
183248 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 15962650 - 15962607
Alignment:
| Q |
312 |
ggataaattagtccataaatcattgtattatagagactaatttg |
355 |
Q |
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| T |
15962650 |
ggataaattagtccttaactcattgtattagagagactaatttg |
15962607 |
T |
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