View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1845_low_5 (Length: 474)
Name: NF1845_low_5
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1845_low_5 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 117 - 459
Target Start/End: Original strand, 32730600 - 32730944
Alignment:
| Q |
117 |
gtggggttcatatgaaaattgaagtcttcattaagaccttcaactcatttggtatccacagatttttctctctaatgatggtgcctatttgacatcaagt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
32730600 |
gtggggttcatatgaaaattgaagtcttcattaagactttcaactcatttggtatccacagatttttctctccaatgatggtgcatatttgacatcaagt |
32730699 |
T |
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| Q |
217 |
cttatgaaaataagtact---attgaggatgttctaagaagttgattcattgttgttgttaatgtaagatggccnnnnnnnagtatataatttgtaatga |
313 |
Q |
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| T |
32730700 |
cttatgaaaataagtactatcattgaggatgttctaagaagttgattcattgttgttgttaatgtaagatggcc-ttttttagtatataatttgtaatga |
32730798 |
T |
|
| Q |
314 |
aagttattttttgcatccattactcattatataccaagagagatatataaatagagagctctgacccatggcacgtggaatctcgtgtgaatcagcaagt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32730799 |
aagttattttttgcatccattactcattatataccaagagagatatataaatagagagctctgaccccgggcacgtggaatctcgtgtgaatcagcaagt |
32730898 |
T |
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| Q |
414 |
accatctcgtaaggctaaatacttttgggtgaccgatagtgaagta |
459 |
Q |
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|||| |||| ||||||||||| || ||||||||||||||||||||| |
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| T |
32730899 |
accacctcgcaaggctaaatatttctgggtgaccgatagtgaagta |
32730944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 32730484 - 32730536
Alignment:
| Q |
1 |
acttcacttgtttatattttttaatagtaatatctaatgagtattagtatctc |
53 |
Q |
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| T |
32730484 |
acttcatttgtttatattttttaatagtcatatctaatgagtattagtatctc |
32730536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 383 - 459
Target Start/End: Complemental strand, 184542 - 184466
Alignment:
| Q |
383 |
ggcacgtggaatctcgtgtgaatcagcaagtaccatctcgtaaggctaaatacttttgggtgaccgatagtgaagta |
459 |
Q |
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||||||||||||| |||||||||||||||| |||| || | ||||||||||||| ||||||||||||||||||||| |
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| T |
184542 |
ggcacgtggaatcccgtgtgaatcagcaaggaccaccttgcaaggctaaatactcctgggtgaccgatagtgaagta |
184466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 383 - 459
Target Start/End: Original strand, 492974 - 493050
Alignment:
| Q |
383 |
ggcacgtggaatctcgtgtgaatcagcaagtaccatctcgtaaggctaaatacttttgggtgaccgatagtgaagta |
459 |
Q |
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| T |
492974 |
ggcacgtggaatcccgtgtgaatcagcaaggaccaccttgcaaggctaaatactcctgggtgaccgatagtgaagta |
493050 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 459
Target Start/End: Original strand, 18190635 - 18190711
Alignment:
| Q |
383 |
ggcacgtggaatctcgtgtgaatcagcaagtaccatctcgtaaggctaaatacttttgggtgaccgatagtgaagta |
459 |
Q |
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||||||||||||| |||||||||||||||| |||| || | ||||||||||||| ||||||| ||||||||||||| |
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| T |
18190635 |
ggcacgtggaatcccgtgtgaatcagcaaggaccaccttgcaaggctaaatactcctgggtgatcgatagtgaagta |
18190711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 459
Target Start/End: Original strand, 34656242 - 34656318
Alignment:
| Q |
383 |
ggcacgtggaatctcgtgtgaatcagcaagtaccatctcgtaaggctaaatacttttgggtgaccgatagtgaagta |
459 |
Q |
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|||||||||||| |||||||||||||||| |||| || | ||||||||||||| ||||||||||||||||||||| |
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| T |
34656242 |
ggcacgtggaatgccgtgtgaatcagcaaggaccaccttgcaaggctaaatactcctgggtgaccgatagtgaagta |
34656318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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