View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1845_low_6 (Length: 473)
Name: NF1845_low_6
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1845_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 468
Target Start/End: Complemental strand, 46793522 - 46793087
Alignment:
| Q |
16 |
attattcgcaatagcattgaagagcaatgttgaacacattttctttcatgaaaatgtcgttttataaagaattgttcctccaaattctgttgattttctc |
115 |
Q |
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| T |
46793522 |
attattcgcaatagcattgaagagcaatgttgaacacattttctttcatgaaaatgtcgttttacaaagaattgttcctccaaattctgttgattttctc |
46793423 |
T |
|
| Q |
116 |
tttgattgctcttagttcccaaactcgttatcaaacaaagagtcattctaattttgttgtgagtcctatcagttcgtgagaattacttaatactctatag |
215 |
Q |
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| T |
46793422 |
tttgattgctcttagttcccaaactcgttatcaaacaaagagtcattataattttgttgtgagtcctatcaattcgtgagaattacttaataccctatag |
46793323 |
T |
|
| Q |
216 |
cattactagtaaaacattatgtagcatagtagcttccctcaaataaaaatgtagcatagcatgccataaccttaattttcattttttaaaatgtttccgc |
315 |
Q |
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| T |
46793322 |
cattactagtaaaacattatgtagcatagtagcttccctcaaataaaaatgtagcatagcatgcaataaccctaattttcattttttaaaatatttccgc |
46793223 |
T |
|
| Q |
316 |
aaactaaagttgttgcatgatcttgccctttgagtagagagctagttctatgcggcannnnnnncaccttaaattgttgcatgaaaataactagtatgta |
415 |
Q |
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| T |
46793222 |
aaac-----------------cttgccctttgagtggagagctagttctatgcggcatttttttcaccttgaattgttgcatgaaaataactagtatgta |
46793140 |
T |
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| Q |
416 |
attgaagtacattagtatactttttgtcacatatatacaatagtatcttaatt |
468 |
Q |
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| T |
46793139 |
attgaaatacattagtatactttttgtcacatatatacaatagtatcttaatt |
46793087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 46785121 - 46785037
Alignment:
| Q |
55 |
tttctttcatgaaaatgtcgttttataaagaattgttcctccaaattctgttgattttctctttgattgctcttagttcccaaactcg |
142 |
Q |
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| T |
46785121 |
tttctttcatgaaaatgtcgttttacaaagaattgt---tccaaactttgttgatttattctttcattactcttagttcccaaactcg |
46785037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 276 - 432
Target Start/End: Complemental strand, 22120150 - 22119994
Alignment:
| Q |
276 |
atgccataaccttaattttcattttttaaaatgtttccgcaaactaaagttgttgcatgatcttgccctttgagtagagagctagttctatgcggcannn |
375 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| |
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| T |
22120150 |
atgccataaccctaattttcattttttaaaatgtttccgaaaactaaagttgttgcatgatctggccctttgagtggagtgctagttctatgcggcattt |
22120051 |
T |
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| Q |
376 |
nnnncaccttaaattgttgcatgaaaataactagtatgtaattgaagtacattagta |
432 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22120050 |
ttttcaccttgaattgttgcatgaaaataactagtatgtaattgaaatacattagta |
22119994 |
T |
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