View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1845_low_9 (Length: 378)
Name: NF1845_low_9
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1845_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 38 - 378
Target Start/End: Complemental strand, 54702378 - 54702039
Alignment:
| Q |
38 |
tgccttgcaacgctttcgatgcacctatccttcttaaaccttaatcatcaattttccaatcctgtagattatcgataatggaagatattttctggatgag |
137 |
Q |
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| T |
54702378 |
tgccttgcaacgctttcgatgcacctatccttcttaaaccttaatcatcaattttccaatcctgtagattatcgataatggaagatattttctggatgag |
54702279 |
T |
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| Q |
138 |
gagctgtttcaattattaaacagagttcagtttatgaacttgtctgccatgaccatattaatgtatcaacttggcaactattttgttagttctaaccact |
237 |
Q |
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| T |
54702278 |
gagctgtttcaattattaaacagagttcagtttatgaacttgtctgccatgaccatattaatgtatcaacttggcaactattttgttagttctaaccact |
54702179 |
T |
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| Q |
238 |
gactcattcataggggaaaactaccttgatctaaatggtaataaagatgacatttattccnnnnnnnnntatacaagatttttaatgtgttgaccacaag |
337 |
Q |
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| T |
54702178 |
gactcattcatagggg-aaactaccttgatctaaatggtaataaagatgacatttattccaaaaaaaaatatacaagatttttaatgtgttgaccacaag |
54702080 |
T |
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| Q |
338 |
attttctttgagacaaccagagtgttgaccacttgctctgc |
378 |
Q |
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| T |
54702079 |
attttctttgagaccacaagagtgttgaccacttgctctgc |
54702039 |
T |
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