View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18460_high_12 (Length: 245)
Name: NF18460_high_12
Description: NF18460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18460_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 42685667 - 42685896
Alignment:
| Q |
1 |
atggtttccattccagtattgaatttgggtttagaagcatggagaacagaagaagtcaaaacagcatgcgatgcttcgtacgaaaaacatgttattctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42685667 |
atggtttccattccagtattgaatttgggtttagaagcatggagaacagaagaagtcaaaacagcatgcgatgcttcgtatgaaaaacatgttattctct |
42685766 |
T |
|
| Q |
101 |
tcggcattttcctctttgtggtttctctaatgggtttcgtaggtgcttgttttcgatcgttcaaaattctagggttctatctccttatcctattcttggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42685767 |
tcggcattttcctctttgtggtttctctaatgggtttcgtaggtgcttgttttcgatcgttcaaaattctagggttctatctccttatcctattcttggc |
42685866 |
T |
|
| Q |
201 |
attcttttttctattctacatcaacatctt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
42685867 |
attcttttttctattctacatcaacatctt |
42685896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University