View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18460_high_14 (Length: 208)

Name: NF18460_high_14
Description: NF18460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18460_high_14
NF18460_high_14
[»] chr3 (2 HSPs)
chr3 (20-186)||(38938854-38939020)
chr3 (19-186)||(7052758-7052928)
[»] scaffold0133 (3 HSPs)
scaffold0133 (19-186)||(9000-9167)
scaffold0133 (119-186)||(13448-13515)
scaffold0133 (20-91)||(13343-13414)
[»] chr6 (18 HSPs)
chr6 (20-186)||(16781599-16781765)
chr6 (32-186)||(18872682-18872839)
chr6 (35-186)||(18794119-18794273)
chr6 (32-186)||(18805688-18805845)
chr6 (20-189)||(16987948-16988123)
chr6 (32-186)||(18870205-18870362)
chr6 (19-186)||(16867503-16867676)
chr6 (122-186)||(16658608-16658672)
chr6 (122-186)||(16797768-16797832)
chr6 (122-186)||(16838280-16838344)
chr6 (134-186)||(18587200-18587252)
chr6 (134-186)||(17070117-17070169)
chr6 (129-186)||(16788571-16788628)
chr6 (119-186)||(16844426-16844493)
chr6 (19-48)||(16658499-16658528)
chr6 (19-48)||(16838171-16838200)
chr6 (19-48)||(17069996-17070025)
chr6 (20-48)||(16797660-16797688)
[»] scaffold0256 (1 HSPs)
scaffold0256 (20-186)||(9644-9810)
[»] chr8 (1 HSPs)
chr8 (20-186)||(13378591-13378757)
[»] scaffold0511 (1 HSPs)
scaffold0511 (31-186)||(9864-10022)
[»] scaffold0230 (1 HSPs)
scaffold0230 (32-186)||(5185-5342)
[»] scaffold0144 (2 HSPs)
scaffold0144 (135-186)||(38099-38150)
scaffold0144 (20-48)||(37978-38006)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 6e-73; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 38939020 - 38938854
Alignment:
Q  20 tctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctggttggcgctcgatgacccccacat 119  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||| |    
T  38939020 tctttatctttgtctcttccatatacttcggattcagtgatgacagaggtagttttccgccactcttcatcttctggttggcgctccatgacccccactt 38938921  T
Q  120 gtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  38938920 gtaatccgaacttcatcctttcttcagcaatatcatcgatctttttagcaacctccttcatcctctt 38938854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 7052928 - 7052758
Alignment:
Q  19 ctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctggttggcgctcg---atgaccccc 115  Q
    |||||||||||||||||||||||||||      ||||||||||||||| |||||||| ||||| || |||||| || | || |||||    ||||| |||    
T  7052928 ctctttatctttgtctcttccatataccacaacttcagtgatgacagaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactccc 7052829  T
Q  116 acatgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    || |||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||| |||||||||||    
T  7052828 acttgtaatccaaacttgatcctttcttcagcaataacatcaatctttttagcaacctctttcatcctctt 7052758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 136; Significance: 4e-71; HSPs: 3)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 9000 - 9167
Alignment:
Q  19 ctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctggttggcgctcgatgacccccaca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  9000 ctctttatctttgtctcttccatatactttggattcagtgatgacagaggtagtttgccgccgcccttcatcttctggttggcgctcgatgacccccaca 9099  T
Q  119 tgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    ||||||||||||||||||||||||||||||||||| |  |||| |||||||| |||||||||||||||    
T  9100 tgtaatccgaacttcatcctttcttcagcaatatcgtcgatctctttagcaatctccttcatcctctt 9167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 13448 - 13515
Alignment:
Q  119 tgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  13448 tgtaatccgaacttcatcctttcttcagcaatatcatcgatctttttagcaacctccttcatcctctt 13515  T

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Target: scaffold0133; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 13343 - 13414
Alignment:
Q  20 tctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatct 91  Q
    ||||||||||||||||||||||||||||| | ||| ||||   |||| |||||||| ||||| || ||||||    
T  13343 tctttatctttgtctcttccatatactttcggttcggtgacagcagaagtagtttggcgccattcatcatct 13414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 9e-66; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 16781599 - 16781765
Alignment:
Q  20 tctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctggttggcgctcgatgacccccacat 119  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| |    
T  16781599 tctttatctctgtctcttccatatactttggattcagtgatgacagaggtagtttgccgccactcttcatcttctggttggtgctccatgacccccacct 16781698  T
Q  120 gtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    | ||||||||||||||||||||||||||||||||||  |||| |||||||| |||||||||||||||    
T  16781699 gcaatccgaacttcatcctttcttcagcaatatcatcgatctctttagcaatctccttcatcctctt 16781765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 186
Target Start/End: Complemental strand, 18872839 - 18872682
Alignment:
Q  32 tctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctggttggcg---ctcgatgacccccacatgtaatccga 128  Q
    ||||||||||||||||| | |||||||||||||||   |||||| ||||| |  |||||| || |||||||   ||| |||||  || | |||||||| |    
T  18872839 tctcttccatatactttcggttcagtgatgacagaaaaagtttggcgccatttatcatctcctcgttggcgatcctccatgactaccgcttgtaatccaa 18872740  T
Q  129 acttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    |||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  18872739 acttgatcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctt 18872682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 35 - 186
Target Start/End: Complemental strand, 18794273 - 18794119
Alignment:
Q  35 cttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctggttggcg---ctcgatgacccccacatgtaatccgaact 131  Q
    |||||||||||||| | |||||||| ||| || |||||||| ||||| || |||||| || |||||||   ||| |||||  || | || ||||| ||||    
T  18794273 cttccatatactttcggttcagtgacgactgaagtagtttggcgccattcatcatctcctcgttggcgatcctccatgactaccgcttgcaatccaaact 18794174  T
Q  132 tcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    | |||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  18794173 tgatcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctt 18794119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 32 - 186
Target Start/End: Complemental strand, 18805845 - 18805688
Alignment:
Q  32 tctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctggttggcg---ctcgatgacccccacatgtaatccga 128  Q
    ||||||||||||||||| | |||||||||||| ||  ||||||| ||||| |  |||||| || |||||||   ||| |||||  || | || ||||| |    
T  18805845 tctcttccatatactttcggttcagtgatgactgaattagtttggcgccatttatcatctcctcgttggcgatcctccatgactaccgcttgcaatccaa 18805746  T
Q  129 acttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    |||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  18805745 acttgatcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctt 18805688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 16987948 - 16988123
Alignment:
Q  20 tctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctggttggcgctcg---atgaccccca 116  Q
    ||||||||||||||||||||||||||||| | ||| |||||   |||  ||||||| ||||| || |||||| || ||||  ||||    ||||| ||||    
T  16987948 tctttatctttgtctcttccatatactttcggttctgtgatagtagaaatagtttggcgccattcatcatctcctcgttgatgctcctccatgactccca 16988047  T
Q  117 catgt---aatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctcttccc 189  Q
    | |||   ||||| ||||| |||||||||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  16988048 cttgttgaaatccaaacttgatcctttcttcagcaatatcatcaatctttttagcaactttcttcatcctcttccc 16988123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 32 - 186
Target Start/End: Complemental strand, 18870362 - 18870205
Alignment:
Q  32 tctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctggttggcg---ctcgatgacccccacatgtaatccga 128  Q
    ||||||||||| ||||| | |||||||| |||||| |||||||| ||    || ||| || || |||||||   ||| |||||  |||| |||||||| |    
T  18870362 tctcttccataaacttttggttcagtgacgacagaagtagtttggcgattttcatcaactcctcgttggcgatcctccatgactaccacttgtaatccta 18870263  T
Q  129 acttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    | || |||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  18870262 atttgatcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctt 18870205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 16867676 - 16867503
Alignment:
Q  19 ctctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctggttggcgctcga---tgaccccc 115  Q
    |||||||||||||||||||||||||||||| | ||| || |  | |||  ||||||| ||||| || |||||| || ||||| ||||     |||| |||    
T  16867676 ctctttatctttgtctcttccatatactttcggttcggtaacaatagaaatagtttggcgccattcatcatctcctcgttggtgctcctctgtgactccc 16867577  T
Q  116 acatgt---aatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    ||  ||   ||||| ||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  16867576 actagttgaaatccaaacttgatcctttcttcagcaatatcatcaatccttttagcaacctccttcatcctctt 16867503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 16658608 - 16658672
Alignment:
Q  122 aatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    ||||| ||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  16658608 aatccaaacttgatcctttcttcagcaatatcatcaatccttttagcaacctccttcatcctctt 16658672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 16797768 - 16797832
Alignment:
Q  122 aatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    ||||| |||||  ||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  16797768 aatccaaactttttcctttcttcagcaatatcatcaatccttttagcaacctccttcatcctctt 16797832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 16838280 - 16838344
Alignment:
Q  122 aatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    ||||| |||||  ||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  16838280 aatccaaactttttcctttcttcagcaatatcatcaatccttttagcaacctccttcatcctctt 16838344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 18587252 - 18587200
Alignment:
Q  134 atcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  18587252 atcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctt 18587200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 17070117 - 17070169
Alignment:
Q  134 atcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    |||||||||| ||||||||| | |||| |||||||||||||||||||||||||    
T  17070117 atcctttctttagcaatatcgtcaatccttttagcaacctccttcatcctctt 17070169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 16788571 - 16788628
Alignment:
Q  129 acttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    |||||||||| |||| ||||||| | | |||||||||||||||| |||||||||||||    
T  16788571 acttcatcctgtctttagcaataacgtcaatctttttagcaaccgccttcatcctctt 16788628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 16844426 - 16844493
Alignment:
Q  119 tgtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    |||||||| ||||| || ||||||||||||||| ||| |||||||| ||| ||||| |||||| ||||    
T  16844426 tgtaatccaaacttgattctttcttcagcaatagcatcaatcttttcagctacctctttcatcttctt 16844493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 16658499 - 16658528
Alignment:
Q  19 ctctttatctttgtctcttccatatacttt 48  Q
    ||||||||||||||||||||||||||||||    
T  16658499 ctctttatctttgtctcttccatatacttt 16658528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 16838171 - 16838200
Alignment:
Q  19 ctctttatctttgtctcttccatatacttt 48  Q
    ||||||||||||||||||||||||||||||    
T  16838171 ctctttatctttgtctcttccatatacttt 16838200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 17069996 - 17070025
Alignment:
Q  19 ctctttatctttgtctcttccatatacttt 48  Q
    ||||||||||||||||||||||||||||||    
T  17069996 ctctttatctttgtctcttccatatacttt 17070025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 16797660 - 16797688
Alignment:
Q  20 tctttatctttgtctcttccatatacttt 48  Q
    |||||||||||||||||||||||||||||    
T  16797660 tctttatctttgtctcttccatatacttt 16797688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 9644 - 9810
Alignment:
Q  20 tctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctggttggcgctcgatgacccccacat 119  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  || ||||||||||||||||||||||||||||||||| |||| ||||||||||| |    
T  9644 tctttatctttgtctcttccaaatactatggattcagtgatgaaggaggtagtttgccgccactcttcatcttctggttggtgctccatgacccccacct 9743  T
Q  120 gtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  9744 gtaatccgaacttcatcctttcttcagcaatatcatcaatctctttagcaatctccttcatcctctt 9810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 13378591 - 13378757
Alignment:
Q  20 tctttatctttgtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctggttggcgctcgatgacccccacat 119  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||    ||||||||| |  |||| ||||| |||||||    
T  13378591 tctttatctttgtctcttccatatactttggatttagtgatgatagaagtagtttggcgccactccatgtcttctggtagatgctccatgactcccacat 13378690  T
Q  120 gtaatccgaacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    ||||||| ||||| ||||  |||||||||||| ||| |||||||||||||||||| |||||||||||    
T  13378691 gtaatccaaacttgatccggtcttcagcaataacatcaatctttttagcaacctctttcatcctctt 13378757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 9864 - 10022
Alignment:
Q  31 gtctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctggttggcg---ctcgatgacccccacatgtaatccg 127  Q
    |||||||||||||||||| | |||||||| ||| || |||||||| ||||| || |||||| || |||||||   ||| |||||  || | || |||||     
T  9864 gtctcttccatatactttcggttcagtgacgactgaagtagtttggcgccattcatcatctcctcgttggcgatcctccatgactaccgcttgcaatcca 9963  T
Q  128 aacttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  9964 aacttgatcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctt 10022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 5185 - 5342
Alignment:
Q  32 tctcttccatatactttggattcagtgatgacagacgtagtttgccgccactcttcatcttctggttggcgctcg---atgacccccacatgtaatccga 128  Q
    ||||||||||||||||| | |||||||| ||||||   |||||| ||||| |  |||||| || ||||||| ||    |||||  || | |||||||| |    
T  5185 tctcttccatatactttcggttcagtgacgacagaaaaagtttggcgccatttatcatctcctcgttggcgatcttccatgactaccgcttgtaatccaa 5284  T
Q  129 acttcatcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    |||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  5285 acttgatcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctt 5342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 38099 - 38150
Alignment:
Q  135 tcctttcttcagcaatatcatgaatctttttagcaacctccttcatcctctt 186  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  38099 tcctttcttcagcaatatcatcaatccttttagcaacctccttcatcctctt 38150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 37978 - 38006
Alignment:
Q  20 tctttatctttgtctcttccatatacttt 48  Q
    |||||||||||||||||||||||||||||    
T  37978 tctttatctttgtctcttccatatacttt 38006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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