View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18460_high_6 (Length: 417)
Name: NF18460_high_6
Description: NF18460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18460_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 51210694 - 51211082
Alignment:
| Q |
19 |
cttccccatcccaaaattttctcttttctcctcagttatttatcacagtttagtaccaatgttctattttctgtgcagcctgtttatcttgacattctca |
118 |
Q |
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| T |
51210694 |
cttccccatcccaaaattttctcttttctcctcagttatttatcacagtttagtaccaatgttctattttctgtgcagcctgtttatcttgacattctca |
51210793 |
T |
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| Q |
119 |
tgccaccgttaattgagaagtggcagcaactttcaaattcagacaaagatctctttccacttctagagtgcttcacatctattgcacacgtatgtatgcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51210794 |
tgccaccgttaattgagaagtggcagcaactttcaaattcagacaaagatctctttccacttctagagtgcttcacatctattgcacacgtatgtatgcc |
51210893 |
T |
|
| Q |
219 |
agtttattatatgggtgtttaacttccaacatttattatatgcgtgttttaatatgagtatgtcagaatttgggttagggcctaactcccataaagctag |
318 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51210894 |
agtttatgatatgggtgtttaacttccaacatttattatatgcgtgttttaatatgagtatgtcagaatttgggttagggcctaactcccataaagctag |
51210993 |
T |
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| Q |
319 |
ctgacagtgtgagagaccacactccaccaccaccacaatataaccactgttcaatatcatttccagtgtgccaccccctgatgcctatg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51210994 |
ctgacagtgtgagagaccacactccaccaccaccacaatataaccactgttcaatatcatttccagtgtgccaccccctgatgcctatg |
51211082 |
T |
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