View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18460_high_7 (Length: 411)

Name: NF18460_high_7
Description: NF18460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18460_high_7
NF18460_high_7
[»] chr1 (1 HSPs)
chr1 (20-411)||(52511880-52512291)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 20 - 411
Target Start/End: Original strand, 52511880 - 52512291
Alignment:
Q  20 cattatacatcttatcaagcagtttctttgcgtcaggcctcctgagaagacctttattgtttggcacaccagttcctaaacaaacagggcagacaagctt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52511880 cattatacatcttatcaagcagtttctttgcgtcaggcctcctgagaagacctttattgtttggcacaccagttcctaaacaaacagggcagacaagctt 52511979  T
Q  120 tcctcgacctacggaaaatctgtcaatttagtcgtttactaagnnnnnnnngaaatgagcaaagtagaagaatgaatgataccataacaattaggacatt 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||        |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52511980 tcctcgacctacggaaaatcagtcaatttagtcgtttactaag-aaaaaaagaaatgagcaaattagaagaatgaatgataccataacaattaggacatt 52512078  T
Q  220 cagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtaccaccacacatatcacct----------aaatgaaaagtag 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||    
T  52512079 cagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtaccaccacacatatcacctaaatgaaatgaaatgaaaagtag 52512178  T
Q  310 tattataataaggaagaagaatattattat-----------taaaaaagaatgaggagaaaagagaagaggactcacaaatgatgttaccacttccacca 398  Q
    |||||||||||||||||| | |||||||||           ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52512179 tattataataaggaagaatattattattattattattattataacaaagaatgaagagaaaagagaagaggactcacaaatgatgttaccacttccacca 52512278  T
Q  399 caatttctgcaac 411  Q
    |||||||||||||    
T  52512279 caatttctgcaac 52512291  T

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