View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18460_low_1 (Length: 586)
Name: NF18460_low_1
Description: NF18460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18460_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 18 - 570
Target Start/End: Complemental strand, 5178088 - 5177537
Alignment:
| Q |
18 |
attttgtcttcaattcaaggatctaattcagttctgacagtaactaatatgtaattaatcatgatctcatgataattatagttggaaaattatcaaaagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5178088 |
attttgtcttcaattcaaggatctaattcagttctgacagtaactaatatgtaattaatcatgatctcatgataattatagttggaaaattatcaaaagg |
5177989 |
T |
|
| Q |
118 |
aacttgaggaaatgaagaaaatgactagactagaatacgttgctcatttaagaaggtacaaatatttgcatctcaatcattatgcagttgaaaaccatat |
217 |
Q |
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| T |
5177988 |
aacttgaggaaatgaagaaaatgactagactagaatacgttgctcatttaagaaggtacaaatatttgcatctcaatcattatgcagttgaaaaccatat |
5177889 |
T |
|
| Q |
218 |
gttaacaatatacataaccatataatttaactttgtaaaatcaggaaaagcagtggattctcaagaggggcttccatgtatagaggagtaacaaggtgag |
317 |
Q |
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| T |
5177888 |
gttaacaatatacataaccatataatttaactttgtaaaatcaggaaaagcagtggattctcaagaggggcttccatgtatagaggagtaacaaggtgag |
5177789 |
T |
|
| Q |
318 |
tctaacatcacatgcattgcactaatttaattttaatatatgatttatatatgaaaaataaaattggctctgattattatctttgtagcagacaccatca |
417 |
Q |
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| T |
5177788 |
tctaacatcacatgcattgcactaatttaa-tttaatatatgatttatatatgaaaaataaaattggctctgattattatctttgtagcagacatcatca |
5177690 |
T |
|
| Q |
418 |
acatggaagatggcaagctcgaatagggagagttgctggaaataaagatctctatcttggaactttcagtgagtatactctcacatttttggttattctt |
517 |
Q |
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| T |
5177689 |
acatggaagatggcaagctcgaatagggagagttgctggaaataaagatctctatcttggaactttcagtgagtatactctcacatttttggttattctt |
5177590 |
T |
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| Q |
518 |
tcttttgtgattgtgaccaatatatttgagaaatgatatttttggttattcat |
570 |
Q |
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| T |
5177589 |
tcttttgtgattgtaaccaatatatttgagaaatgatatttttggttattcat |
5177537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 403 - 491
Target Start/End: Original strand, 40190506 - 40190594
Alignment:
| Q |
403 |
tagcagacaccatcaacatggaagatggcaagctcgaatagggagagttgctggaaataaagatctctatcttggaactttcagtgagt |
491 |
Q |
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| T |
40190506 |
tagcagacatcaccaacatggaagatggcaagctagaattggtagagtggctggtaataaagatctatatcttggaactttcagtgagt |
40190594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 40190198 - 40190276
Alignment:
| Q |
97 |
agttggaaaattatcaaaaggaacttgaggaaatgaagaaaatgactagactagaatacgttgctcatttaagaaggta |
175 |
Q |
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| T |
40190198 |
agttggaaaattatcaaaatcaacttgaggaaatgaagaatatgacaagacaggaatatgttgctcatttaagaaggta |
40190276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 40190344 - 40190401
Alignment:
| Q |
257 |
atcaggaaaagcagtggattctcaagaggggcttccatgtatagaggagtaacaaggt |
314 |
Q |
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||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
40190344 |
atcagaaaaagcagtggattctcaagaggggcatccatgtacagaggagtaacaaggt |
40190401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 24562180 - 24562109
Alignment:
| Q |
416 |
caacatggaagatggcaagctcgaatagggagagttgctggaaataaagatctctatcttggaactttcagt |
487 |
Q |
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| T |
24562180 |
caacatggaagatggcaagcaaggattggcagagttgcaggaaataaagatctatacttgggaactttcagt |
24562109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 405 - 487
Target Start/End: Complemental strand, 30618771 - 30618689
Alignment:
| Q |
405 |
gcagacaccatcaacatggaagatggcaagctcgaatagggagagttgctggaaataaagatctctatcttggaactttcagt |
487 |
Q |
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||||||| ||||||||||| |||||||||||| | || || |||||||| || || ||||||||||| || |||||||||||| |
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| T |
30618771 |
gcagacatcatcaacatggtagatggcaagctaggattggaagagttgcaggcaacaaagatctctacctaggaactttcagt |
30618689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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