View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18460_low_2 (Length: 552)
Name: NF18460_low_2
Description: NF18460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18460_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 12 - 275
Target Start/End: Original strand, 42395416 - 42395679
Alignment:
| Q |
12 |
aagaacaccagcaataggaccagctgttgtgtataagtaacattgtgaagccttcaacactttctctccttcttgcataccaaaaatattcttgaaaatg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42395416 |
aagaacaccagcaataggaccagctgttgtgtataagtaacattgtgaagccttcaacactttctctccttcttgcataccaaaaatattcttgaaaatg |
42395515 |
T |
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| Q |
112 |
ttccctctcccaccttcttgtattatccttgcacccaaactcaacttacccttcagagtctctgatagtttaggacctagttttactgcaatgaatttat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42395516 |
ttccctctcccaccttcttgtattatccttgcacccaaactcaacttacccttcagagtctctgatagtttaggacctagttttactgcaatgaatttat |
42395615 |
T |
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| Q |
212 |
atatacttgattaaacacaaaaatttaagatcctnnnnnnntattgattattagagaattgtta |
275 |
Q |
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| T |
42395616 |
atatacttgattaaacacaaaaatttaagatcctaaaaaaatattgattattagagaattgtta |
42395679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 276 - 462
Target Start/End: Original strand, 42395703 - 42395878
Alignment:
| Q |
276 |
atagatccaagtagaccaacgaacacataactaatctaacactaatgtgaggtaaatatttagagaggtgacttaccatgttcatgaatcctacatgcaa |
375 |
Q |
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| T |
42395703 |
atagatccaagtagaccaacgaacacataacta-----------atgtgaggtaaatatttagagaggtgacttaccatgttgatgaaccctacatgcaa |
42395791 |
T |
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| Q |
376 |
aacttgtgtttttcctggttgttgctttcttgagctccattttagcagttgcagtagtttctttggctgcagttacaagaagaacca |
462 |
Q |
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| T |
42395792 |
aacttgtgtttttcctggttgttgctttcttgtgctccattttagcagttgcagtagtttctttggctgcagttaaaagaagaacca |
42395878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 537
Target Start/End: Original strand, 42395880 - 42395913
Alignment:
| Q |
504 |
attaattgaaggctgtgtatgagaagaagagtat |
537 |
Q |
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| T |
42395880 |
attaattgaaggttgtgtatgagaagaagagtat |
42395913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 29296100 - 29295916
Alignment:
| Q |
19 |
ccagcaataggaccagctgttgtgtataagtaacattgtgaagccttcaacactttctctccttcttgcataccaaaaatattcttgaaaatgttccctc |
118 |
Q |
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|||||||||||||||||||| || ||||| || || || ||||| ||||| | ||||||| | |||||||| |||||||||| |||||||||||| |||| |
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| T |
29296100 |
ccagcaataggaccagctgtggtatataaatagcactgagaagctttcaagagtttctcttcctcttgcatcccaaaaatatgcttgaaaatgttacctc |
29296001 |
T |
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| Q |
119 |
tcccaccttcttgtattatccttgcacccaaactcaacttacccttcagagtctctgatagtttaggacctagttttactgcaat |
203 |
Q |
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| T |
29296000 |
ttccaccttcttgaataattttggcacctaaacttaacttacccttcaaagtctcagaaaatttaggacctaatttcactgcaat |
29295916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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