View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18460_low_3 (Length: 494)

Name: NF18460_low_3
Description: NF18460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18460_low_3
NF18460_low_3
[»] chr3 (4 HSPs)
chr3 (50-485)||(20708737-20709177)
chr3 (181-226)||(3369400-3369445)
chr3 (50-108)||(994348-994406)
chr3 (169-226)||(26373296-26373353)
[»] chr1 (12 HSPs)
chr1 (18-298)||(15309070-15309350)
chr1 (82-246)||(26759458-26759625)
chr1 (92-246)||(26924912-26925070)
chr1 (81-242)||(30052415-30052582)
chr1 (181-256)||(18628753-18628828)
chr1 (181-247)||(16219405-16219471)
chr1 (50-108)||(25077768-25077826)
chr1 (181-247)||(33324212-33324278)
chr1 (50-108)||(48563422-48563480)
chr1 (181-246)||(50959319-50959384)
chr1 (50-109)||(11871482-11871539)
chr1 (181-241)||(23043649-23043709)
[»] chr6 (6 HSPs)
chr6 (181-247)||(17211409-17211475)
chr6 (168-222)||(21479695-21479749)
chr6 (167-256)||(6257505-6257596)
chr6 (181-255)||(6189951-6190025)
chr6 (181-226)||(1717521-1717566)
chr6 (181-226)||(31946482-31946527)
[»] chr2 (3 HSPs)
chr2 (181-234)||(35658372-35658425)
chr2 (181-247)||(38002211-38002277)
chr2 (181-226)||(25221874-25221919)
[»] scaffold0178 (1 HSPs)
scaffold0178 (168-245)||(9307-9386)
[»] chr4 (4 HSPs)
chr4 (168-247)||(10330087-10330166)
chr4 (49-108)||(27433331-27433390)
chr4 (50-107)||(35260066-35260123)
chr4 (183-235)||(21948337-21948389)
[»] scaffold0003 (1 HSPs)
scaffold0003 (50-245)||(353033-353230)
[»] chr8 (1 HSPs)
chr8 (181-247)||(1029418-1029484)
[»] chr7 (3 HSPs)
chr7 (81-141)||(20118162-20118223)
chr7 (168-245)||(22543078-22543157)
chr7 (48-108)||(28033836-28033896)


Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 50 - 485
Target Start/End: Complemental strand, 20709177 - 20708737
Alignment:
Q  50 ctcgaaagagcttctatacttgctgatgttttcagggagttgttggcacttgaattttgtactgtatttgttgtcgatcaattcgtcattttaaactctt 149  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||| || ||||| ||||||||||||||||||||||||     
T  20709177 ctcgaaagagcttctatacttactgatgttttcaggaagttgttggcacttgaattttgtaatgtgttggttgttgatcaattcgtcattttaaactcta 20709078  T
Q  150 aactgttttttgcaaacattcactcttcatat-ttttgtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgataagtgaattttta 248  Q
    || ||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| ||||||||||||| | | |||||| ||||||||||    
T  20709077 aagtgttttttgcaaacattcactcttcatattttttgtaacttgatttcgtgcccgtacgcgggttcgctaggttgcgcctatgataaatgaattttta 20708978  T
Q  249 ctaggataatttagggtcg-gtcccttgatacaatttagcacaatatatttccatttcgattatatttgggtcaggtc----aaatgaccctcattctgt 343  Q
    |||| ||| |||||||| |  ||||||||||| |||||||||||| ||||||||||||| |||||||| ||||| |||     ||||||| ||||||| |    
T  20708977 ctagaatagtttagggttgattcccttgatacgatttagcacaatgtatttccatttcggttatatttaggtcaagtctaatgaatgaccatcattctct 20708878  T
Q  344 gaatctctatatttgtatttaatatattttccctttcatctnnnnnnnnnttgcgtttttaaatttctctttggtacttgttttaaaagtgggccagaaa 443  Q
      |||||||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20708877 ctatctctatatttgtatttaatatattttccctttcatct-aaaaaaaattgcgttttttaatttctctttggtacttgttttaaaagtgggccagaaa 20708779  T
Q  444 attagtgtcaccatagttgtctaacgttaaatatagtataat 485  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20708778 attagtgtcaccatagttgtctaacgttaaatatagtataat 20708737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 3369445 - 3369400
Alignment:
Q  181 tttttgtaacttggtttcgtgtccgtacgcggattcgctaggttgc 226  Q
    ||||||||||||||||||| | |||||||||| |||||||||||||    
T  3369445 tttttgtaacttggtttcgcgcccgtacgcgggttcgctaggttgc 3369400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 994348 - 994406
Alignment:
Q  50 ctcgaaagagcttctatacttgctgatgttttcagggagttgttggcacttgaattttg 108  Q
    ||||||||| ||||||||||||||| | | || |||||||||||| |||||| ||||||    
T  994348 ctcgaaagaacttctatacttgctgttttgtttagggagttgttgccacttggattttg 994406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 26373353 - 26373296
Alignment:
Q  169 tcactcttcatatttttgtaacttggtttcgtgtccgtacgcggattcgctaggttgc 226  Q
    ||||||||||| |||||||||  |||||||| | | |||||||| |||||||||||||    
T  26373353 tcactcttcatttttttgtaatatggtttcgcgcctgtacgcgggttcgctaggttgc 26373296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 8e-56; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 15309070 - 15309350
Alignment:
Q  18 catgtctacctccactccagtacatgttattactcgaaagagcttctatacttgctgatgttttcagggagttgttggcacttgaattttgtactgtatt 117  Q
    ||||||||||||||| | ||||| ||||| |  |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || ||    
T  15309070 catgtctacctccacccgagtac-tgttaatgttcgaaagagcttctatacttgctgatgttttcagggagttgttggcgcttggattttgtaccgtgtt 15309168  T
Q  118 tgttgtcgatcaattcgtcattttaaactcttaactgttttttgcaaacattcactcttcat-atttttgtaacttggtttcgtgtccgtacgcggattc 216  Q
     |  ||||||| ||||| |||||||||||| |||||||||||||||||| ||||||||| ||  ||||||||||||||||||||| | ||| || | |||    
T  15309169 ggcggtcgatccattcgccattttaaactc-taactgttttttgcaaacgttcactctttatgttttttgtaacttggtttcgtgcctgtaagcaggttc 15309267  T
Q  217 gctaggttgcacttgtgataagtgaatttttactaggataatttagggtcggtcc-cttgatacaatttagcacaatatattt 298  Q
    |||  |||||  | |||||||||||||||||  || |||| |||||||| ||||| |||| ||| ||||||||| ||||||||    
T  15309268 gctgagttgcgttagtgataagtgaatttttgttacgatagtttagggttggtccacttggtacgatttagcacgatatattt 15309350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 246
Target Start/End: Original strand, 26759458 - 26759625
Alignment:
Q  82 cagggagttgttggcacttgaattttgt-actgtatttgttgtcgatcaattcgtcat-tttaaactcttaactgttttttgcaaacattcactcttcat 179  Q
    ||||||| |||||||||||| ||||||| ||||| || |  ||||||| ||||| ||| |||||||||||| | ||| | |||||| ||||| | |||||    
T  26759458 cagggagctgttggcacttggattttgttactgtgttggcggtcgatccattcgccatatttaaactctta-cagttctctgcaaatattcattattcat 26759556  T
Q  180 attttt--gtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgataagtgaatttt 246  Q
     |||||  ||||  ||||||||||||||||||||| |||| |||||||| |||||||| ||||||||||    
T  26759557 ctttttttgtaatctggtttcgtgtccgtacgcgggttcgttaggttgcgcttgtgattagtgaatttt 26759625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 246
Target Start/End: Complemental strand, 26925070 - 26924912
Alignment:
Q  92 ttggcacttgaattttgt-actgtatttgttgtcgatcaattcgtcat-tttaaactcttaactgttttt-tgcaaacattcactcttca--tatttttg 186  Q
    |||||||||| ||||||| ||||| || |  ||||||| ||||| ||| |||||||||||| |||||| | |||||| ||||||| ||||  | ||||||    
T  26925070 ttggcacttggattttgttactgtgttggcggtcgatccattcgccatatttaaactctta-ctgtttctctgcaaatattcactattcacctttttttg 26924972  T
Q  187 taacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgataagtgaatttt 246  Q
    ||| |||||||||||||||||||||| || ||| | |||| |||||||| ||||||||||    
T  26924971 taatttggtttcgtgtccgtacgcgggtttgctggattgcgcttgtgattagtgaatttt 26924912  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 30052582 - 30052415
Alignment:
Q  81 tcagggagttgttggcacttgaattttgta-ctgtatttgttgtcgatcaattcgtcattttaa--actcttaactgttttttgcaaacattcactcttc 177  Q
    |||||||| || |||||||||||||||||  | || ||  | ||||||| |||||||||||| |  |||||||  |||| ||||||||| |||||| ||     
T  30052582 tcagggagctgctggcacttgaattttgttgccgtgttgatggtcgatccattcgtcatttttataactcttat-tgttctttgcaaacgttcactttta 30052484  T
Q  178 atatt----tttgtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgataagtgaa 242  Q
    |||||    |||||||||||||||||  | ||||||||| |||||| |||||||| |||||| ||||||    
T  30052483 atattattttttgtaacttggtttcgcattcgtacgcgggttcgcttggttgcacatgtgattagtgaa 30052415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 18628828 - 18628753
Alignment:
Q  181 tttttgtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgataagtgaatttttactaggata 256  Q
    |||||||||| |||||||| | |||||||||| ||||||||||||| |  ||||| |||||||||||  |||||||    
T  18628828 tttttgtaacctggtttcgcgcccgtacgcgggttcgctaggttgcgcccgtgattagtgaatttttgttaggata 18628753  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 16219405 - 16219471
Alignment:
Q  181 tttttgtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgataagtgaattttt 247  Q
    |||||||| | |||||||||| |||||||||| |||||| ||||||||  ||||  |||||||||||    
T  16219405 tttttgtagcctggtttcgtgcccgtacgcgggttcgctgggttgcacccgtgactagtgaattttt 16219471  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 25077768 - 25077826
Alignment:
Q  50 ctcgaaagagcttctatacttgctgatgttttcagggagttgttggcacttgaattttg 108  Q
    ||||||| ||||| ||| ||||||||| | ||||||||| ||||| |||||||||||||    
T  25077768 ctcgaaaaagcttttatgcttgctgatttgttcagggagctgttgtcacttgaattttg 25077826  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 33324212 - 33324278
Alignment:
Q  181 tttttgtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgataagtgaattttt 247  Q
    |||||||||  |||||||| || ||||||||| |||||| |||||||  |||||| |||||||||||    
T  33324212 tttttgtaatctggtttcgcgttcgtacgcgggttcgctgggttgcatatgtgatcagtgaattttt 33324278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 48563422 - 48563480
Alignment:
Q  50 ctcgaaagagcttctatacttgctgatgttttcagggagttgttggcacttgaattttg 108  Q
    ||||||||||||  ||| |||| || | | |||||||||||||||||||||||||||||    
T  48563422 ctcgaaagagctattatgcttgttgttttgttcagggagttgttggcacttgaattttg 48563480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 50959384 - 50959319
Alignment:
Q  181 tttttgtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgataagtgaatttt 246  Q
    |||||||||  |||||||| | |  ||||||| ||||||||||||| |||||||| ||||||||||    
T  50959384 tttttgtaatctggtttcgcgcctatacgcgggttcgctaggttgcgcttgtgattagtgaatttt 50959319  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 11871482 - 11871539
Alignment:
Q  50 ctcgaaagagcttctatacttgctgatgttttcagggagttgttggcacttgaattttgt 109  Q
    ||||||||||||| ||| |||| || ||||  |||||||||||||||||||| |||||||    
T  11871482 ctcgaaagagcttttattcttgatgttgtt--cagggagttgttggcacttggattttgt 11871539  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 23043649 - 23043709
Alignment:
Q  181 tttttgtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgataagtga 241  Q
    |||||||||||| |||||||| ||||| |||| |||||| |||||| || |||| ||||||    
T  23043649 tttttgtaacttagtttcgtgcccgtatgcgggttcgctgggttgcgctcgtgagaagtga 23043709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 17211409 - 17211475
Alignment:
Q  181 tttttgtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgataagtgaattttt 247  Q
    ||||| ||||||||||||| |||||||||||| || | | |||||||||||||||||||||||||||    
T  17211409 tttttttaacttggtttcgcgtccgtacgcgggtttgttgggttgcacttgtgataagtgaattttt 17211475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 21479749 - 21479695
Alignment:
Q  168 ttcactcttcatatttttgtaacttggtttcgtgtccgtacgcggattcgctagg 222  Q
    |||||||||||||||||| |||||||||||||   |||||||||| |||||||||    
T  21479749 ttcactcttcatatttttttaacttggtttcgcacccgtacgcgggttcgctagg 21479695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 6257505 - 6257596
Alignment:
Q  167 attcactcttcatatt--tttgtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgataagtgaatttttactaggata 256  Q
    ||||||| ||||||||  |||||||||||||||||   |||||||||| |||||| |||||| | | |||| |||| |||||| ||||||||    
T  6257505 attcacttttcatattattttgtaacttggtttcgcacccgtacgcgggttcgctgggttgcgcctatgattagtgtatttttgctaggata 6257596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 6189951 - 6190025
Alignment:
Q  181 tttttgtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgataagtgaatttttactaggat 255  Q
    ||||||||||||||||||| | |||||| | | |||||||||||||  | ||||| || |||||||| |||||||    
T  6189951 tttttgtaacttggtttcgcgaccgtactcaggttcgctaggttgcgttcgtgattagcgaatttttgctaggat 6190025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 1717566 - 1717521
Alignment:
Q  181 tttttgtaacttggtttcgtgtccgtacgcggattcgctaggttgc 226  Q
    ||||||||||||||||||| ||||||||||||  ||||| ||||||    
T  1717566 tttttgtaacttggtttcgagtccgtacgcgggatcgctgggttgc 1717521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 31946482 - 31946527
Alignment:
Q  181 tttttgtaacttggtttcgtgtccgtacgcggattcgctaggttgc 226  Q
    ||||||||||||||||||| | |||||||||| |||||| ||||||    
T  31946482 tttttgtaacttggtttcgcgcccgtacgcgggttcgctgggttgc 31946527  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 35658372 - 35658425
Alignment:
Q  181 tttttgtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtga 234  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  35658372 tttttgtaacttggtttcgcgtccgtacgcgggttcgctaggttgcgcttgtga 35658425  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 38002211 - 38002277
Alignment:
Q  181 tttttgtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgataagtgaattttt 247  Q
    ||||||||||||||||||| | |||||||||| || ||| |||||| | |||||| ||||| |||||    
T  38002211 tttttgtaacttggtttcgcgcccgtacgcgggtttgctgggttgcgcctgtgattagtgatttttt 38002277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 25221874 - 25221919
Alignment:
Q  181 tttttgtaacttggtttcgtgtccgtacgcggattcgctaggttgc 226  Q
    |||||||||||||||||||  ||||||||||| |||||| ||||||    
T  25221874 tttttgtaacttggtttcgaatccgtacgcgggttcgctgggttgc 25221919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 9386 - 9307
Alignment:
Q  168 ttcactcttcata--tttttgtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgataagtgaattt 245  Q
    |||||||||||||  |||||||||||||||||||   |||||||||| ||||||||||||| | |||||| |||||||||    
T  9386 ttcactcttcatagttttttgtaacttggtttcgcacccgtacgcgggttcgctaggttgcgcctgtgattagtgaattt 9307  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 10330087 - 10330166
Alignment:
Q  168 ttcactcttcatatttttgtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgataagtgaattttt 247  Q
    |||||| ||||| ||||| ||||||||||||||| ||||||| || || |||| |||||||| |||||| ||||||||||    
T  10330087 ttcacttttcatttttttttaacttggtttcgtgcccgtacgtgggtttgctaagttgcactcgtgatacgtgaattttt 10330166  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 27433331 - 27433390
Alignment:
Q  49 actcgaaagagcttctatacttgctgatgttttcagggagttgttggcacttgaattttg 108  Q
    |||||||||||||| ||| ||||| ||| | ||||||||||| |||||||||| ||||||    
T  27433331 actcgaaagagcttttatgcttgcggatttgttcagggagtttttggcacttggattttg 27433390  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 35260123 - 35260066
Alignment:
Q  50 ctcgaaagagcttctatacttgctgatgttttcagggagttgttggcacttgaatttt 107  Q
    ||||||||||||| ||| ||||||| | | |||||| || ||||||||||||||||||    
T  35260123 ctcgaaagagcttttatgcttgctgctttgttcaggcagctgttggcacttgaatttt 35260066  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 21948389 - 21948337
Alignment:
Q  183 tttgtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgat 235  Q
    |||||||||||||||||||| ||||| ||| || ||| |||||||| ||||||    
T  21948389 tttgtaacttggtttcgtgttcgtacacgggtttgctgggttgcacgtgtgat 21948337  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 245
Target Start/End: Complemental strand, 353230 - 353033
Alignment:
Q  50 ctcgaaagagcttctatacttgctgatgttttcagggagttgttggcacttgaattttgt-actgtatttgttgtcgatcaattcgtcattt-taaactc 147  Q
    ||||||||||||| ||| ||||||| ||| ||||| |||  ||||||||||| ||||||| ||  | || |  ||| ||| ||||| ||||| || || |    
T  353230 ctcgaaagagcttgtatgcttgctggtgtattcagagagcggttggcacttggattttgttaccatgttagcggtcaatccattcgccatttctatac-c 353132  T
Q  148 ttaactgtt-ttttgcaaacattcactcttcatattttt-gtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgataagtgaattt 245  Q
    ||||||||| ||||||||  ||||||| ||||||||||| |||||||||||||| |  | || | || |||||| |||||||||  ||||||||||||||    
T  353131 ttaactgttcttttgcaat-attcacttttcatattttttgtaacttggtttcgcgctcctatgtgggttcgctgggttgcactcatgataagtgaattt 353033  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 1029484 - 1029418
Alignment:
Q  181 tttttgtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgataagtgaattttt 247  Q
    ||||||||| ||| |||||| |||||||| || |||||||||||||   |||||| |||||||||||    
T  1029484 tttttgtaatttgatttcgtctccgtacgtgggttcgctaggttgcttctgtgatgagtgaattttt 1029418  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 20118223 - 20118162
Alignment:
Q  81 tcagggagttgttggcacttgaattttg-tactgtatttgttgtcgatcaattcgtcatttt 141  Q
    ||||||||||||||||||||| |||||| ||| ||||| |  ||||||| ||||||||||||    
T  20118223 tcagggagttgttggcacttggattttgttaccgtattggcggtcgatctattcgtcatttt 20118162  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 22543078 - 22543157
Alignment:
Q  168 ttcactcttcatatttt--tgtaacttggtttcgtgtccgtacgcggattcgctaggttgcacttgtgataagtgaattt 245  Q
    |||||||||||||||||  |||||||| ||||||   | |||||||| ||||||||||||  | |||||| |||||||||    
T  22543078 ttcactcttcatatttttttgtaacttagtttcgcaccagtacgcgggttcgctaggttgtgcatgtgattagtgaattt 22543157  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 28033896 - 28033836
Alignment:
Q  48 tactcgaaagagcttctatacttgctgatgttttcagggagttgttggcacttgaattttg 108  Q
    ||||||||||||||| ||| ||||||  ||||||||| ||| || || |||||||||||||    
T  28033896 tactcgaaagagcttttatgcttgctactgttttcagagagctgctgacacttgaattttg 28033836  T

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