View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18460_low_4 (Length: 468)
Name: NF18460_low_4
Description: NF18460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18460_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 34408973 - 34408512
Alignment:
| Q |
1 |
gccggcgccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcctcgaggcagtgacgggaagccaatcatcgatggccttctgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34408973 |
gccggcgccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcctcgaggcagtgacgggaagccaatcatcgatggccttctgc |
34408874 |
T |
|
| Q |
101 |
cttgctgcaatatcatctgacgacgacatgtttccaatcaatatatctttgcaatgcaacaatgtgatgtaaccaattacaacttattcaaaggtctagt |
200 |
Q |
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|||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34408873 |
cttgctgcaacatcatctgacgatgacatgtttccgatcaatatatctttgcaatgcaacaatgtgatgtaaccaattacaacttattcaaaggtctagt |
34408774 |
T |
|
| Q |
201 |
agctagcttgtgttctggtgtgtcttttcttttgtaattacaatttatccataagtactgtcataagttaccacaaagtgtggagattatatggaggttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34408773 |
agctagcttgtgttctggtgtgtcttttcttttgtaattacaatttatccataagtactgtcataagttaccacaaagtgtggagattatatggaggttg |
34408674 |
T |
|
| Q |
301 |
agcattactataaatagaactttattaatccacaagtgataacacgatctactttttcgctaaacatcactcggtcaactacatttagttagttattaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34408673 |
agcattactataaatagaactttattaatccacaagtgataacacgatctactttttcgctaaacatcactcggtcaactacatttagttagttattaca |
34408574 |
T |
|
| Q |
401 |
gttagtaacaattatacgggagaaacgtatgcttcggacttgattataattatattcttcga |
462 |
Q |
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| T |
34408573 |
gttagtaacaattatacgggagaaacttatgcttcggacttagttataattatattattcga |
34408512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 7980045 - 7980097
Alignment:
| Q |
8 |
ccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcct |
60 |
Q |
| |
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||||||||||| |||| |||||||||||| |||||||||||||| || ||||| |
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| T |
7980045 |
ccaaccatggcagtgacattgtgaaaagctgagtaccaccattttgcattcct |
7980097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 38827965 - 38828053
Alignment:
| Q |
8 |
ccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcctcgaggcagtgacgggaagccaatcatcgatggcctt |
96 |
Q |
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||||||||||| || | |||||| || || || |||||||||||||| || || || ||||| || |||||||||||||| |||||||| |
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| T |
38827965 |
ccaaccatggctgttagattgtggaacgccgaataccaccatttggcatttctagaagcagttacaggaagccaatcatcaatggcctt |
38828053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 43851837 - 43851749
Alignment:
| Q |
8 |
ccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcctcgaggcagtgacgggaagccaatcatcgatggcctt |
96 |
Q |
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||||||||||| || | |||||||||||| | |||||||||||| || ||||| || | ||| | ||||||||||||||| || ||||| |
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| T |
43851837 |
ccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcattccttgaagaagttatgggaagccaatcatctattgcctt |
43851749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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