View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18460_low_5 (Length: 433)
Name: NF18460_low_5
Description: NF18460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18460_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 32812443 - 32812848
Alignment:
| Q |
18 |
ctatggagatgcaaagcgttatctggactgtatgatcctaacaggtcatcaactatactatatgctgttgacatacgttcaagattgaatcctccattgc |
117 |
Q |
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| T |
32812443 |
ctatggagatgcaaagcgttatctgggccgtatgatcctaacaggtcatcaactatactatatgctgttgacatacgttcaagattgaatcctccattgc |
32812542 |
T |
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| Q |
118 |
cgagagagtacgctgggaatgcagttttaacggcgtacgcttcggcaaagtgtgaggaattgaaggaaggtgaattctcaaggttggtggagatggtgtg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32812543 |
cgagagagtacgctgggaatgcagttttaacggcgtaagcttcggcaaagtgtgaggaattgaaggaaggtgaattctcaaggttggtggagatggtgtg |
32812642 |
T |
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| Q |
218 |
ggagggtacaaaaagaatgggtgatgagtatgcaaggtctattattgattggggagaattgtataatggttttccgaatggagagcttttggtgtcttca |
317 |
Q |
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| T |
32812643 |
ggagggtacaaaaagaatgggtgatgagtatgcaaggtctattattgattggggagaattgtataatggttttccgaatggagagcttttggtgtcttca |
32812742 |
T |
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| Q |
318 |
tggtggaggttagggtttgaagaggtggagtatccatgggggaagcctaagtattgttgtccagtagtttatcataagaaggatattatactattgttcc |
417 |
Q |
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| T |
32812743 |
tggtggaggttagggtttgaagaggtggagtatccatgggggaagcctaagtattgttgtccagtggtttatcataagaaggatattatactattgttcc |
32812842 |
T |
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| Q |
418 |
cttctt |
423 |
Q |
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| T |
32812843 |
cttctt |
32812848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 48 - 423
Target Start/End: Original strand, 32830003 - 32830378
Alignment:
| Q |
48 |
tatgatcctaacaggtcatcaactatactatatgctgttgacatacgttcaagattgaatcctccattgccgagagagtacgctgggaatgcagttttaa |
147 |
Q |
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||||||||||| || ||||| | ||| ||||||| ||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||| |
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| T |
32830003 |
tatgatcctaatagatcatctattattttatatgcggttgatatacgttcaagattgaatcctccattgccgagagcgtacactgggaatgcagtattaa |
32830102 |
T |
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| Q |
148 |
cggcgtacgcttcggcaaagtgtgaggaattgaaggaaggtgaattctcaaggttggtggagatggtgtgggagggtacaaaaagaatgggtgatgagta |
247 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||||| ||||||| || |
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| T |
32830103 |
cagcgtacgcttcggcaaagtgtgaggaattgaaggaaggtgaattttcaaggttggtggagatggtggaagagggttcaagaagaatgagtgatgaata |
32830202 |
T |
|
| Q |
248 |
tgcaaggtctattattgattggggagaattgtataatggttttccgaatggagagcttttggtgtcttcatggtggaggttagggtttgaagaggtggag |
347 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32830203 |
tgcaagatctattattgattggggagagttgtataatggttttccaaatggggatgttttggtgtcttcatggtggaggctagggtttgaagaggtggag |
32830302 |
T |
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| Q |
348 |
tatccatgggggaagcctaagtattgttgtccagtagtttatcataagaaggatattatactattgttcccttctt |
423 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| || ||||||| |
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| T |
32830303 |
tatccatgggggaagcctaagtattgttgtcctgtggtttatcataggaaggatattatactattatttccttctt |
32830378 |
T |
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