View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18460_low_8 (Length: 295)
Name: NF18460_low_8
Description: NF18460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18460_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 39271826 - 39272089
Alignment:
| Q |
17 |
aaatatgaaatcatttgagattatttatgtgtaatttctaacctattcagtataatggctttagttctctcagtaattgatgtaagcaattttcttggat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39271826 |
aaatatgaaatcatttgagattatttatgtgtaatttctaacctattcagtataatggctttagttctctcagtaattgatgtaagcaattttcttggat |
39271925 |
T |
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| Q |
117 |
ccaaggtccactgaggcgggtcaagcggcacacgcatctgtccagttaagttcacaaaaacaagggttacattagataaaggaaaaagtgataaaatgtt |
216 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39271926 |
ccaaggtccactgaggcgggtcaagcggcacatgtatctgtccagttaagttcacaaaaacaagggttacattagataaaggaaaaagtgataaaatgtt |
39272025 |
T |
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| Q |
217 |
aatatcaataacttcaacagttaaagggacagcaaacatgcaggatcattggattgtacacagg |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39272026 |
aatatcaataacttcaacagttaaagggacagcaaacatgcaggatcattggattgtacacagg |
39272089 |
T |
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