View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18461_low_2 (Length: 399)
Name: NF18461_low_2
Description: NF18461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18461_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 52799868 - 52800239
Alignment:
| Q |
19 |
ggcaaagaccataccattataggaaatgcatctctcaactttatctttctaatttccatgccaagacttatctatacagagggtaggaactaggaaggaa |
118 |
Q |
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| T |
52799868 |
ggcaaagaccataccattataggaaatgcatctctcaactttatctttctaatttccatgccaagacttatctatacagagggtaggaactaggaaggaa |
52799967 |
T |
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| Q |
119 |
ggagacataaatcaaacatagtaaacttgaa-agnnnnnnnnnnccaggtgaagaaatatatagctaggtaggttatctatggctcgaggaaagatccag |
217 |
Q |
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| T |
52799968 |
ggagacataaatcaaacatagtaaacttgaagaaaaaaaaacaaccaggtgaagaaatatatagctaggtaggttatctatggctcgaggaaagatccag |
52800067 |
T |
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| Q |
218 |
atcaagagaattgagaacacaactaaccgacaagtaacttactcaaaacgaaggaatggtcttttcaagaaggctaatgagctcactgttctttgtgatg |
317 |
Q |
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| T |
52800068 |
atcaagagaattgagaacacaactaaccgacaagtaacttactcaaaacgaaggaatggtcttttcaagaaggctaatgagctcactgttctttgtgatg |
52800167 |
T |
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| Q |
318 |
ctaaggtttctattattatgttttccagcactggcaagcttcatgaatacattagcccctccgcctcctatg |
389 |
Q |
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| T |
52800168 |
ctaaggtttctattattatgttttccagcactggcaagcttcatgaatacattagcccctccgcctcgtatg |
52800239 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 327
Target Start/End: Original strand, 8201110 - 8201198
Alignment:
| Q |
239 |
actaaccgacaagtaacttactcaaaacgaaggaatggtcttttcaagaaggctaatgagctcactgttctttgtgatgctaaggtttc |
327 |
Q |
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| T |
8201110 |
actaacaggcaagtgacatactcaaagagaaggaatggtatattcaagaaagcacatgaacttagtgttctttgtgatgctaaggtttc |
8201198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 319
Target Start/End: Complemental strand, 34831029 - 34830931
Alignment:
| Q |
221 |
aagagaattgagaacacaactaaccgacaagtaacttactcaaaacgaaggaatggtcttttcaagaaggctaatgagctcactgttctttgtgatgct |
319 |
Q |
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|||||||||||||||| || ||| ||||||| || | | | ||||||||||| |||||||| || || ||| |||| || ||||||||||||||||| |
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| T |
34831029 |
aagagaattgagaacaaaatcaacagacaagttaccttcgctaaacgaaggaacggtcttttgaaaaaagcttatgaactttctgttctttgtgatgct |
34830931 |
T |
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