View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18461_low_5 (Length: 254)

Name: NF18461_low_5
Description: NF18461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18461_low_5
NF18461_low_5
[»] chr6 (3 HSPs)
chr6 (25-238)||(14533693-14533906)
chr6 (180-238)||(14529499-14529557)
chr6 (91-134)||(6719830-6719873)
[»] chr8 (3 HSPs)
chr8 (27-175)||(24887989-24888140)
chr8 (27-175)||(25430990-25431141)
chr8 (54-176)||(27084263-27084388)
[»] chr7 (10 HSPs)
chr7 (31-176)||(31642806-31642952)
chr7 (28-177)||(19362613-19362765)
chr7 (27-173)||(12640304-12640453)
chr7 (25-98)||(44598623-44598696)
chr7 (27-178)||(44629419-44629573)
chr7 (27-134)||(26074973-26075080)
chr7 (27-134)||(26098760-26098867)
chr7 (91-178)||(40954849-40954939)
chr7 (91-176)||(12467574-12467662)
chr7 (91-132)||(21267807-21267848)
[»] chr1 (6 HSPs)
chr1 (27-164)||(52453689-52453829)
chr1 (29-174)||(28702233-28702380)
chr1 (29-175)||(171086-171234)
chr1 (71-131)||(4808504-4808564)
chr1 (53-175)||(23826145-23826270)
chr1 (109-176)||(14876784-14876854)
[»] chr3 (4 HSPs)
chr3 (34-176)||(29438468-29438613)
chr3 (35-177)||(43615897-43616041)
chr3 (35-127)||(788838-788931)
chr3 (61-176)||(47648996-47649114)
[»] chr4 (2 HSPs)
chr4 (27-173)||(46851865-46852012)
chr4 (109-176)||(50070177-50070247)
[»] chr2 (4 HSPs)
chr2 (91-168)||(38972223-38972303)
chr2 (29-77)||(17623267-17623315)
chr2 (95-178)||(9615680-9615767)
chr2 (27-117)||(14735500-14735590)
[»] chr5 (3 HSPs)
chr5 (104-176)||(16717189-16717264)
chr5 (104-176)||(19645442-19645517)
chr5 (27-131)||(32633038-32633142)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 14533693 - 14533906
Alignment:
Q  25 cgttttgaggggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaat 124  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14533693 cgtttcgaggggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaat 14533792  T
Q  125 atatattccaaagtatggcatcctcaacaaattaactcaagatctgccactgttctttactagtctataactattaaacaaactcattgaaagaactagt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14533793 atatattccaaagtatggcatcctcaacaaattaactcaagatctgccactgttctttactagtctataactattaaacaaactcattgaaagaactagt 14533892  T
Q  225 ttcagatttcagat 238  Q
    ||||||||||||||    
T  14533893 ttcagatttcagat 14533906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 14529499 - 14529557
Alignment:
Q  180 tttactagtctataactattaaacaaactcattgaaagaactagtttcagatttcagat 238  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14529499 tttaccagtctataactattaaacaaactcattgaaagaactagtttcagatttcagat 14529557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 6719873 - 6719830
Alignment:
Q  91 tattaattattgataatacttgaaaccagttaatatatattcca 134  Q
    |||||||||||||||  ||||||||||| |||||||||||||||    
T  6719873 tattaattattgatataacttgaaaccatttaatatatattcca 6719830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 175
Target Start/End: Complemental strand, 24888140 - 24887989
Alignment:
Q  27 ttttgaggggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaatat 126  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24888140 ttttgaggggattcaaacccacttcctcttgctcctttaaaacattttataccacttatccagctattaattattgataatacttgaaaccagttaatat 24888041  T
Q  127 atattcc---aaagtatggcatcctcaacaaattaactcaagatctgccact 175  Q
    |||||||   ||| | ||||| || |||||||||||||||||||| ||||||    
T  24888040 atattccataaaattttggcacccccaacaaattaactcaagatccgccact 24887989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 27 - 175
Target Start/End: Original strand, 25430990 - 25431141
Alignment:
Q  27 ttttgaggggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaatat 126  Q
    |||| ||||||||  |||| ||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  25430990 ttttaaggggatttgaacccacttcctcttgctcctttaaaatattttataccatttgtccagctattaattattgataacacttgaaaccagttaatat 25431089  T
Q  127 atattcca--aagtat-ggcatcctcaacaaattaactcaagatctgccact 175  Q
    ||||||||  || ||| |||| || | |||||||||||||| ||| ||||||    
T  25431090 atattccataaaatattggcacccccgacaaattaactcaaaatccgccact 25431141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 27084388 - 27084263
Alignment:
Q  54 cttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaatatatattcc---aaagtatggcatcctca 150  Q
    ||||||||||| |||||||| | | | |||| ||   |||||||||||| |||||||| |||||| || |||||||||||   ||||| ||||| || ||    
T  27084388 cttgctcctttcaaacatttgacatcgcttggcctattattaattattgttaatacttaaaaccatttgatatatattccataaaagtttggcaccccca 27084289  T
Q  151 acaaattaactcaagatctgccactg 176  Q
    |||||||||||||||||  |||||||    
T  27084288 acaaattaactcaagattcgccactg 27084263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 31 - 176
Target Start/End: Original strand, 31642806 - 31642952
Alignment:
Q  31 gaggggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaatatatat 130  Q
    ||||||||||||||| |||||  ||||||| |||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||    
T  31642806 gaggggattcaaacccacttc--cttgctcttttaaaacattttataccacttggtcagctattaattattaataatacttgaaaccagttaatatatat 31642903  T
Q  131 tcc---aaagtatggcatcctcaacaaattaactcaagatctgccactg 176  Q
    |||   ||||| |||||||| ||||||||||||||||||||||||||||    
T  31642904 tccataaaagtttggcatccccaacaaattaactcaagatctgccactg 31642952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 19362613 - 19362765
Alignment:
Q  28 tttgaggggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaatata 127  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||    
T  19362613 tttgaggggaatcaaacccacttcctcttgctcctttaaaacattttataccacttggccagccattaattattaataatacttgaaaccagttaatata 19362712  T
Q  128 tattcc---aaagtatggcatcctcaacaaattaactcaagatctgccactgt 177  Q
    ||||||   ||||| ||||| || ||||||| |||||||||||| ||||||||    
T  19362713 tattccataaaagtttggcacccccaacaaaataactcaagatccgccactgt 19362765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 173
Target Start/End: Complemental strand, 12640453 - 12640304
Alignment:
Q  27 ttttgaggggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaatat 126  Q
    ||||||||||||||||||  || ||  |||||||||||||||||||||||||||||||  ||| |||||||||||| |||| | | |||||| |||||||    
T  12640453 ttttgaggggattcaaactaacatccacttgctcctttaaaacattttataccacttgatcagttattaattattgttaatgcgtaaaaccatttaatat 12640354  T
Q  127 atattcc---aaagtatggcatcctcaacaaattaactcaagatctgcca 173  Q
    |||||||   ||||| ||||| || | |||||||||||||||||| ||||    
T  12640353 atattccataaaagtttggcacccccgacaaattaactcaagatccgcca 12640304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 44598623 - 44598696
Alignment:
Q  25 cgttttgaggggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaatt 98  Q
    ||||| |||||||||| |||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||    
T  44598623 cgtttcgaggggattcgaacccacttcctcttgctcctttaacacattttataccacttggccagctattaatt 44598696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 44629419 - 44629573
Alignment:
Q  27 ttttgaggggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaatat 126  Q
    ||||||||||||||||||| || || ||||| || ||| ||||| ||||||||||| |  ||| || |||||||||    | |||||||||  |||||||    
T  44629419 ttttgaggggattcaaacccacatcctcttgttcttttcaaacaatttataccactaggtcagttactaattattgtatcttcttgaaaccgtttaatat 44629518  T
Q  127 atattcca---aagtatggcatcctcaacaaattaactcaagatctgccactgtt 178  Q
    ||||||||   |||| ||||| || | |||||| ||||||||||| |||||||||    
T  44629519 atattccatagaagtttggcaccccctacaaatcaactcaagatccgccactgtt 44629573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 26075080 - 26074973
Alignment:
Q  27 ttttgaggggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaatat 126  Q
    |||||| | |||||||||| ||  | ||||||||||||||||   ||||||||||| | || | ||| ||||||||||| | |||||||||| |||||||    
T  26075080 ttttgaagtgattcaaacccacaccctcttgctcctttaaaaggatttataccactaggccggttataaattattgatacttcttgaaaccatttaatat 26074981  T
Q  127 atattcca 134  Q
    ||||||||    
T  26074980 atattcca 26074973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 26098867 - 26098760
Alignment:
Q  27 ttttgaggggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaatat 126  Q
    |||||| | |||||||||| ||  | ||||||||||||||||   ||||||||||| | || | ||| ||||||||||| | |||||||||| |||||||    
T  26098867 ttttgaagtgattcaaacccacaccctcttgctcctttaaaaggatttataccactaggccggttataaattattgatacttcttgaaaccatttaatat 26098768  T
Q  127 atattcca 134  Q
    ||||||||    
T  26098767 atattcca 26098760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 40954939 - 40954849
Alignment:
Q  91 tattaattattgataatacttgaaaccagttaatatatattcca---aagtatggcatcctcaacaaattaactcaagatctgccactgtt 178  Q
    ||||||| ||||||| | |||||||||| |||||||||||| ||   | || ||||| || |||||| ||||||||||||| |||||||||    
T  40954939 tattaataattgatatttcttgaaaccatttaatatatatttcatatatgtttggcacccccaacaatttaactcaagatccgccactgtt 40954849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 12467662 - 12467574
Alignment:
Q  91 tattaattattgataatacttgaaaccagttaatatatattcca---aagtatggcatcctcaacaaattaactcaagatctgccactg 176  Q
    ||||||| ||||||| |  ||||||||| |||||||||||||||   | || ||||| || |||||| ||||||||||||| |||||||    
T  12467662 tattaataattgatattttttgaaaccatttaatatatattccatatatgtttggcacccccaacaatttaactcaagatccgccactg 12467574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 21267807 - 21267848
Alignment:
Q  91 tattaattattgataatacttgaaaccagttaatatatattc 132  Q
    |||||||||||||||  ||||||||||| |||||||||||||    
T  21267807 tattaattattgatataacttgaaaccatttaatatatattc 21267848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 52453829 - 52453689
Alignment:
Q  27 ttttgaggggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaatat 126  Q
    ||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||    
T  52453829 ttttgaggggattcaaacccacttcctcttgttcttttaaaacattttataccacttggccagcaattaattattgataatactttaaaccagttaatat 52453730  T
Q  127 atattcc---aaagtatggcatcctcaacaaattaactcaa 164  Q
    |||||||   ||||| ||||| || ||||||||||||||||    
T  52453729 atattccataaaagtttggcacccccaacaaattaactcaa 52453689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 174
Target Start/End: Complemental strand, 28702380 - 28702233
Alignment:
Q  29 ttgaggggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaatatat 128  Q
    ||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||| | |||||||    
T  28702380 ttgaggggattcaaacccacttcctcttgctccttcaaaacatttta-accacttggccaactattaattattgataatacttgaaaccattaaatatat 28702282  T
Q  129 attcc---aaagtatggcatcctcaacaaattaactcaagatctgccac 174  Q
    |||||   ||||| ||||| || |||||||||||||||||||| |||||    
T  28702281 attccataaaagtttggcacccccaacaaattaactcaagatccgccac 28702233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 171086 - 171234
Alignment:
Q  29 ttgaggggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaatatat 128  Q
    ||||||||||||||||  | ||  | ||||||||||||||||||||||||||||||  || | ||||||||||| ||||| ||||||| | |||||||||    
T  171086 ttgaggggattcaaactcaattgttgttgctcctttaaaacattttataccacttgggcaaccattaattattgttaatatttgaaacaatttaatatat 171185  T
Q  129 attcc---aaagtatggcatcctcaacaaattaactcaagatctgccact 175  Q
    |||||   || || |||||||| |||||||||||||||||||| ||||||    
T  171186 attccataaaggtttggcatcc-caacaaattaactcaagatccgccact 171234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 4808504 - 4808564
Alignment:
Q  71 ttttataccacttgtccagctattaattattgataatacttgaaaccagttaatatatatt 131  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||    
T  4808504 ttttataccacttgatcagctattaattattgataatacttgaaaccatttaatatatatt 4808564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 175
Target Start/End: Original strand, 23826145 - 23826270
Alignment:
Q  53 tcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaatatatattcca---aagtatggcatcctc 149  Q
    |||||||||||| ||| | ||||||||||| | |||| |||||||||||| || | ||||||| |  |||||||||||||||   |||| ||||| || |    
T  23826145 tcttgctcctttcaaataatttataccactagaccagttattaattattgttacttcttgaaatcgtttaatatatattccatagaagtttggcacccac 23826244  T
Q  150 aacaaattaactcaagatctgccact 175  Q
    || || ||||||||||||||||||||    
T  23826245 aataagttaactcaagatctgccact 23826270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 14876854 - 14876784
Alignment:
Q  109 cttgaaaccagttaatatatattcca---aagtatggcatcctcaacaaattaactcaagatctgccactg 176  Q
    |||||||||| |||||||||||| ||   |||| ||||| || ||||||||||| |||||||| |||||||    
T  14876854 cttgaaaccatttaatatatattacatagaagtttggcacccccaacaaattaagtcaagatccgccactg 14876784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 176
Target Start/End: Original strand, 29438468 - 29438613
Alignment:
Q  34 gggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaatatatattcc 133  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29438468 gggattcaaacccacttcctcttgctcctttaaaacattttatacaacttggccaactattaattattgataatacttgaaaccagttaatatatattcc 29438567  T
Q  134 ---aaagtatggcatcctcaacaaattaactcaagatctgccactg 176  Q
       ||||| || ||  | |||||||||||||||||||  |||||||    
T  29438568 ataaaagtttgacactcccaacaaattaactcaagattcgccactg 29438613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 35 - 177
Target Start/End: Original strand, 43615897 - 43616041
Alignment:
Q  35 ggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaatatatattcc- 133  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||||||||||||     
T  43615897 ggattcaaaaccacttcctcttgctcctttaaaacattttataccacttagccagctattaattattgataatacttg-aactagttaatatatattcca 43615995  T
Q  134 --aaagtatggcatcctcaacaaattaactcaagatctgccactgt 177  Q
      ||||| || || || |||||||||||||||||||| ||||||||    
T  43615996 taaaagtttgacacccccaacaaattaactcaagatccgccactgt 43616041  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 788931 - 788838
Alignment:
Q  35 ggattcaaaccgacttcatcttgctcctttaaa-acattttataccacttgtccagctattaattattgataatacttgaaaccagttaatata 127  Q
    |||||| |||| || || ||||||||||||||  ||||| ||||||||||  |||| |||||||||||||||||| ||||||| | ||||||||    
T  788931 ggattcgaacccacatcctcttgctcctttaaggacattctataccacttaaccagttattaattattgataatatttgaaacaatttaatata 788838  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 176
Target Start/End: Complemental strand, 47649114 - 47648996
Alignment:
Q  61 ctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaatatatattcca---aagtatggcatcctcaacaaatt 157  Q
    |||| ||||| || |||||||| | |||  |||||||||||||||  ||||||||||| |||||||||||||||   || | ||||| || ||| || ||    
T  47649114 ctttcaaacaattcataccactaggccaattattaattattgatataacttgaaaccatttaatatatattccatagaaatttggcacccccaagaattt 47649015  T
Q  158 aactcaagatctgccactg 176  Q
    ||||||||||| |||||||    
T  47649014 aactcaagatccgccactg 47648996  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 173
Target Start/End: Complemental strand, 46852012 - 46851865
Alignment:
Q  27 ttttgaggggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaatat 126  Q
    ||||||||||||| ||||| || ||  ||||||| ||||||| ||||||||||||||| || | ||||||||||||||||||||| ||||||  ||||||    
T  46852012 ttttgaggggatttaaaccaacatccacttgctcatttaaaatattttataccacttgaccggttattaattattgataatacttaaaaccatataatat 46851913  T
Q  127 atattc--caaagtatggcatcctcaacaaattaactcaagatctgcca 173  Q
    || |||   ||||| ||||| || |||||||||||||||||||| ||||    
T  46851912 at-ttcataaaagtttggcacccccaacaaattaactcaagatccgcca 46851865  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 50070177 - 50070247
Alignment:
Q  109 cttgaaaccagttaatatatattcca---aagtatggcatcctcaacaaattaactcaagatctgccactg 176  Q
    |||||||||| |||||||||||| ||   |||| ||||| || ||||||||||| |||||||| |||||||    
T  50070177 cttgaaaccatttaatatatattacatagaagtttggcacccccaacaaattaagtcaagatccgccactg 50070247  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 38972303 - 38972223
Alignment:
Q  91 tattaattattgataatacttgaaaccagttaatatatattcca---aagtatggcatcctcaacaaattaactcaagatc 168  Q
    ||||||| ||||||| | |||||||||| |||||||||||||||   | || |||||||| |||||| |||||||||||||    
T  38972303 tattaataattgatatttcttgaaaccatttaatatatattccatatatgtttggcatccccaacaatttaactcaagatc 38972223  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 17623315 - 17623267
Alignment:
Q  29 ttgaggggattcaaaccgacttcatcttgctcctttaaaacattttata 77  Q
    |||||||||||| |||| ||||  |||||||||||||||||||||||||    
T  17623315 ttgaggggattcgaacccacttactcttgctcctttaaaacattttata 17623267  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 9615767 - 9615680
Alignment:
Q  95 aattattgataatacttgaaaccagttaatatatattccaaagta----tggcatcctcaacaaattaactcaagatctgccactgtt 178  Q
    |||||||||||  ||||||||||| ||||||||||||||| || |    ||||| || ||| || ||||||||||||| |||||||||    
T  9615767 aattattgatataacttgaaaccatttaatatatattccatagaaattttggcacccccaagaatttaactcaagatccgccactgtt 9615680  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 14735590 - 14735500
Alignment:
Q  27 ttttgaggggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaacc 117  Q
    |||| ||||||||| || | || || |||||||||||||||||| |||||| |||| |  ||| |||||||||||| || | |||||||||    
T  14735590 ttttaaggggattcgaatccacatcttcttgctcctttaaaacaatttatatcactaggtcagttattaattattgttatttcttgaaacc 14735500  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 16717189 - 16717264
Alignment:
Q  104 taatacttgaaaccagttaatatatattcca---aagtatggcatcctcaacaaattaactcaagatctgccactg 176  Q
    ||||| |||| |||| |||||||||||||||   |||| ||||| || |||||||||||||||||||| |||||||    
T  16717189 taatatttgataccatttaatatatattccataaaagtttggcacccccaacaaattaactcaagatccgccactg 16717264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 19645442 - 19645517
Alignment:
Q  104 taatacttgaaaccagttaatatatattcca---aagtatggcatcctcaacaaattaactcaagatctgccactg 176  Q
    ||||| |||| |||| |||||||||||||||   |||| ||||| || |||||||||||||||||||| |||||||    
T  19645442 taatatttgataccatttaatatatattccataaaagtttggcacccccaacaaattaactcaagatccgccactg 19645517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 32633142 - 32633038
Alignment:
Q  27 ttttgaggggattcaaaccgacttcatcttgctcctttaaaacattttataccacttgtccagctattaattattgataatacttgaaaccagttaatat 126  Q
    |||| ||||||||| |||| || |  ||||||| |||| ||||| ||||||||||| | || | |||||||||||| || | |||||||||  |||||||    
T  32633142 tttttaggggattcgaacccacattctcttgcttctttcaaacaatttataccactagaccggttattaattattgttacttcttgaaaccgtttaatat 32633043  T
Q  127 atatt 131  Q
    |||||    
T  32633042 atatt 32633038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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