View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18461_low_6 (Length: 246)
Name: NF18461_low_6
Description: NF18461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18461_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 30877849 - 30877620
Alignment:
| Q |
1 |
atggaaatggaaggttatgatatatttggagatgctactgagagaattagtaaaaatggttttgaagtaaacaatgaggtaattggaagtgggtatggtt |
100 |
Q |
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| T |
30877849 |
atggaaatggaaggttatgatatatttggagatgctactgagagaattggtaaaaatggttttgaagtaaacaatgaggtaattggaagtgggtatggtt |
30877750 |
T |
|
| Q |
101 |
caagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgtccactacagagagaagtgttga |
200 |
Q |
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| T |
30877749 |
caagtttctctctggttttggatagggagagaggggagcttgtagaggaacctgttaaaatggaaggaaagggtgtgtccactacagagagaagtgttga |
30877650 |
T |
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| Q |
201 |
agctttgaagaatcatagtgaggccgaaag |
230 |
Q |
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|||||||||||||||||||||||| ||||| |
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| T |
30877649 |
agctttgaagaatcatagtgaggcagaaag |
30877620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 230
Target Start/End: Complemental strand, 39332933 - 39332785
Alignment:
| Q |
79 |
gtaattggaagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgt |
178 |
Q |
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| T |
39332933 |
gtaaatggaaatggatatggttcatcttcttcactggttttagatagagaaaaaggagagcttgtggaggcagctgtgaaattggaaagaaagggtgtat |
39332834 |
T |
|
| Q |
179 |
ccactacagagagaagtgttgaagctttgaagaatcatagtgaggccgaaag |
230 |
Q |
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| T |
39332833 |
cacct---gagagaagtattgaagctttgaagaatcatagtgaagcagaaag |
39332785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 216
Target Start/End: Complemental strand, 30203705 - 30203571
Alignment:
| Q |
79 |
gtaattggaagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgt |
178 |
Q |
| |
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|||| ||||| ||| ||||||||| || || |||||||||||||| || | ||| ||| |||| |||||| |||| ||| | ||| |||||||||||| |
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| T |
30203705 |
gtaaatggaaatggatatggttcatcttcttcgctggttttggatagagaaaaaggagagtttgtggaggcaactgtgaaattagaaagaaagggtgtgt |
30203606 |
T |
|
| Q |
179 |
ccactacagagagaagtgttgaagctttgaagaatcat |
216 |
Q |
| |
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| || ||||||||| |||||||||||||||||||| |
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| T |
30203605 |
cacct---gagagaagtattgaagctttgaagaatcat |
30203571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 12102677 - 12102538
Alignment:
| Q |
79 |
gtaattggaagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgt |
178 |
Q |
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|||| ||||||||| ||||||||| || || |||||||||||||| || | ||| |||||||| |||||| |||| ||| | ||| |||||||||||| |
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| T |
12102677 |
gtaaatggaagtggatatggttcatcttcttcactggttttggatagagaaaaaggagagcttgtggaggcagctgtgaaattagaaagaaagggtgtgt |
12102578 |
T |
|
| Q |
179 |
ccactacagagagaagtgttgaagctttgaagaatcatagtga |
221 |
Q |
| |
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| || | ||||||| | ||||||||||||||||||||||| |
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| T |
12102577 |
cacct---gggagaagtatcgaagctttgaagaatcatagtga |
12102538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 17146603 - 17146474
Alignment:
| Q |
87 |
aagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgtccactaca |
186 |
Q |
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|||||| ||||||||| || || |||||||||||||| || | ||| ||||||| |||||| |||| ||| | ||| |||||||||| ||| | |
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| T |
17146603 |
aagtggatatggttcatcttcttcactggttttggatagagaaaaaggagagcttgcggaggcagctgtgaaattagaaagaaagggtgt---cac--ct |
17146509 |
T |
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| Q |
187 |
gagagaagtgttgaagctttgaagaatcatagtga |
221 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| |
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| T |
17146508 |
gagagaagtattgaagctttgaagaatcatagtga |
17146474 |
T |
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