View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18462_high_12 (Length: 228)
Name: NF18462_high_12
Description: NF18462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18462_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 34136790 - 34137000
Alignment:
| Q |
1 |
tgatgctttgtgcttcacttcaagacccccaacatcatcttgggcaagaatagttaaggcaccagcatccttgtgtcgcccaacgccgagagctaggtga |
100 |
Q |
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| T |
34136790 |
tgatgctttgtgcttcacttcaagacccccaacatcatcttgggcaagaatagttaaggcaccagcatccttgtgtcgcccaacgccgagagctaggtga |
34136889 |
T |
|
| Q |
101 |
gggtaagggcatggaggatagtggttgaatctaataaagctagtgtgatctttgaagaactcttcaaacctctttgcttcaactcctaagctcaaagcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34136890 |
gggtaagggcatggaggatagtggttgaatctaataaagctagtgtgatctttgaagaactcttcaaacctctttgcttcaactcctaagctcaaagcta |
34136989 |
T |
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| Q |
201 |
ttagctcaagc |
211 |
Q |
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||||||||||| |
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| T |
34136990 |
ttagctcaagc |
34137000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 34131110 - 34131305
Alignment:
| Q |
12 |
gcttcacttcaagacccccaacatcatcttgggcaagaatagttaaggcaccagcatccttgtgtcgcccaacgccgagagctaggtgagggtaagggca |
111 |
Q |
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| T |
34131110 |
gcttcacttcaagtcctccaacctcatcttgggcaagaatagttaaggcaccagcatccttgtgtcgtccaactccaagtgctaggtgagggtaagggca |
34131209 |
T |
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| Q |
112 |
tggaggatagtggttgaatctaataaagctagtgtgatctttgaagaactcttcaaacctctttgcttcaactcctaagctcaaagctattagctc |
207 |
Q |
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| T |
34131210 |
tggaggatagtggttgaatctaataaagctagtttgatacttgaagaattcttcaaacctctttgcttcaagtcctaagcttagagctattagctc |
34131305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 34139959 - 34140154
Alignment:
| Q |
12 |
gcttcacttcaagacccccaacatcatcttgggcaagaatagttaaggcaccagcatccttgtgtcgcccaacgccgagagctaggtgagggtaagggca |
111 |
Q |
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|||||||||||||||| |||| |||| | ||| ||||||||| |||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| |
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| T |
34139959 |
gcttcacttcaagaccttcaacctcatttagggtaagaatagtcaaggcaccagcatccttgtgtcttccaaggccaagagctaggtgagggtaagggca |
34140058 |
T |
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| Q |
112 |
tggaggatagtggttgaatctaataaagctagtgtgatctttgaagaactcttcaaacctctttgcttcaactcctaagctcaaagctattagctc |
207 |
Q |
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||||||||||| ||||||||| ||||||||||| |||| |||||||| |||||||||||||||||||||| ||||||||| |||||||| ||||| |
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| T |
34140059 |
tggaggatagtagttgaatcttataaagctagtttgatacttgaagaattcttcaaacctctttgcttcaagtcctaagcttaaagctataagctc |
34140154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 34142605 - 34142803
Alignment:
| Q |
12 |
gcttcacttcaagacccccaacatcatcttgggcaagaatagttaaggcaccagcatccttgtgtcgcccaacgccgagagctaggtgagggtaagggca |
111 |
Q |
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||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||| ||| | ||| | || ||||| ||||||||||||||||| |
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| T |
34142605 |
gcttcacttcaagtcctccaacctcatcttgggcaagaatagttaaggcaccagaatccttatgtggaccagcaccaagagcaaggtgagggtaagggca |
34142704 |
T |
|
| Q |
112 |
tggaggatagtggttgaatctaataaagctagtgtgatctt---tgaagaactcttcaaacctctttgcttcaactcctaagctcaaagctattagctc |
207 |
Q |
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||||||||| ||||| | ||||| ||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| | |||||| ||||| |
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| T |
34142705 |
tggaggataatggttaagtctaagaaagctagtttgatctttgatgaagaattcttcaaacctctttgcttcaactcctaagctaagagctatgagctc |
34142803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 34125967 - 34126159
Alignment:
| Q |
11 |
tgcttcacttcaagacccccaacatcatcttgggcaagaatagttaaggcaccagcatccttgtgtcgcccaacgccgagagctaggtgagggtaagggc |
110 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || | ||| |||||||| | ||| |||| | |
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| T |
34125967 |
tgcttcacttcaagaccagcaacctcatcttgggcaagaatagttaaggcaccagcatccttgtgtcttcccatgccaagagctagctcaggagaaggac |
34126066 |
T |
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| Q |
111 |
atggaggatagtggttgaatctaataaagctagtgtgatctttgaagaactcttcaaacctctttgcttcaactcctaagctcaaagctatta |
203 |
Q |
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||||||||||||| |||| ||||| | |||||| ||| |||||||| |||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
34126067 |
atggaggatagtgattgattctaaacacgctagttgtatccttgaagaattcttcaaacctcattgcttcaagccctaagctcaaagctatta |
34126159 |
T |
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