View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18462_high_2 (Length: 818)
Name: NF18462_high_2
Description: NF18462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18462_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 162 - 502
Target Start/End: Complemental strand, 36379133 - 36378790
Alignment:
| Q |
162 |
catttatggattgggagagaagtgtgacacaggaaacttctacgtatacaaatcata-gagcccacatcgactagttcacaagtaaaaataattgtta-- |
258 |
Q |
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| T |
36379133 |
catttatggattgggagagaagtgtgacacaggaaacttctacgtatacaaatcataagagcccacatcgactagttcacaagtaaaaataattgttata |
36379034 |
T |
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| Q |
259 |
gagttataaattaagaggacttcttctacctttaccaaacacagagaagtggagccacgaatgaaatgaaatattgaacttttgggttgaaataaagatg |
358 |
Q |
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| T |
36379033 |
gagttataaattaagaggacttattctacctttaccaaacacagagatgtggagccacgaatgaaatgaaatattgaacttttgggttgaaataaagata |
36378934 |
T |
|
| Q |
359 |
aagaggtgatagaaatagacaattcgtaattgtgaaatttattcccatcttattctttaattcaattcaatttcatatttccgaaccaaaaaggaagtgg |
458 |
Q |
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| T |
36378933 |
aagagttgatagaaatagacaattcgtaattgtgaaatttattcccatcttattctttaattcaattcaatttcatatttccgaaccaaaaaggaaattg |
36378834 |
T |
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| Q |
459 |
aagatagaaagaagaccctgagttttaacaagaaagaaataaca |
502 |
Q |
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| T |
36378833 |
aagatagaaagaagaccctgagttttaacaagaaagaaataaca |
36378790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 518 - 802
Target Start/End: Complemental strand, 36378647 - 36378378
Alignment:
| Q |
518 |
tttgctcctaccttcttgcttagcatgttcaattgtggtcataataaaagttaacacatcaacaaaagcattatttctacaaatattcattgcaaagcaa |
617 |
Q |
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| T |
36378647 |
tttgctcctaccttcttgcttagcatgttcaattgtggtcataataaaagttaacacatcaacaaaagcattatttctacaaatattcattgcaa----- |
36378553 |
T |
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| Q |
618 |
catattgcaatgtcagcttttaatccaccgaatttcaggaaacttccaaagaacctcaacaatgagattttattttcttgtcttagaattaaccctgaag |
717 |
Q |
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| T |
36378552 |
----------tgtcagcttttaatccaccgaatttcaggaaacttccaaagaacctcaacaatgagattttattttcttgtcttagcattaaccctgaag |
36378463 |
T |
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| Q |
718 |
ctttgaatgctggaaagctgagaaaaggaacatatgaagtggaattgcttgaatcatgagatgacaagaaaatagactagaattg |
802 |
Q |
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| T |
36378462 |
ctttgaatgctggaaagctgagaaaaggaacatatgaagtggaattgcttgaatcatgagatgacaagaaaatagactagaattg |
36378378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 406 - 510
Target Start/End: Complemental strand, 36368440 - 36368337
Alignment:
| Q |
406 |
tcttattctttaattcaattcaatttcatatttccgaaccaaaaaggaagtggaagatagaaagaagaccctgagttttaacaagaaagaaataacaata |
505 |
Q |
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| T |
36368440 |
tcttattctttgattcaattcaatttcatatttgcgaaccaaaaaggaaatggaagatagaaagaag-cccagagttttaacaagaaaaaaataacaata |
36368342 |
T |
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| Q |
506 |
ttcaa |
510 |
Q |
| |
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| T |
36368341 |
ttcaa |
36368337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 36379274 - 36379199
Alignment:
| Q |
20 |
gaggatcttgtaaatatataatagtgataatattccttttaatatcttccattaaacatggaattgagtactgaag |
95 |
Q |
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| T |
36379274 |
gaggatcttgtaaatatataatagtgataatattccttttaatatcttccattaaacatggaattgagtactgaag |
36379199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 522 - 597
Target Start/End: Complemental strand, 36367900 - 36367825
Alignment:
| Q |
522 |
ctcctaccttcttgcttagcatgttcaattgtggtcataataaaagttaacacatcaacaaaagcattatttctac |
597 |
Q |
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| T |
36367900 |
ctccaaccttcttgtttagcatgttcatttgtgctcataataaaagttaactcatcaacaaaagcattatttctac |
36367825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 324 - 416
Target Start/End: Complemental strand, 36368549 - 36368461
Alignment:
| Q |
324 |
atgaaatattgaacttttgggttgaaataaagatgaagaggtgatagaaatagacaattcgtaattgtgaaatttatt-cccatcttattcttt |
416 |
Q |
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| T |
36368549 |
atgaaatattgcacttttgggttgaaacgaagatgaagg-----tagaaatagccaattcgtaattgtgaaatttattccccatcttattcttt |
36368461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 719
Target Start/End: Complemental strand, 36372952 - 36372883
Alignment:
| Q |
650 |
tttcaggaaacttccaaagaacctcaacaatgagattttattttcttgtcttagaattaaccctgaagct |
719 |
Q |
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| T |
36372952 |
tttcaggacacttccaaagaatcttaacaatgagattttctttccctgtcttggcatgaaccctgaagct |
36372883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 36375924 - 36375873
Alignment:
| Q |
197 |
acttctacgtatacaaatcata-gagcccacatcgactagttcacaagtaaa |
247 |
Q |
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| T |
36375924 |
acttctatgtatacaaatcataagaacccacatcgaccagttcacaagtaaa |
36375873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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