View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18462_low_1 (Length: 1021)
Name: NF18462_low_1
Description: NF18462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18462_low_1 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 920; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 920; E-Value: 0
Query Start/End: Original strand, 14 - 1021
Target Start/End: Original strand, 29281332 - 29282338
Alignment:
| Q |
14 |
cagagacagtggaacttaatgtgaatatgcattgtgaggcttgtgctgagcaactcaagagaaagatactccaaatgagaggtatactttgtttcttctt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29281332 |
cagagacagtggaacttaatgtgaatatgcattgtgaggcttgtgctgagcaactcaagagaaagatactccaaatgagaggtatactttgtttcttctt |
29281431 |
T |
|
| Q |
114 |
gatttcaatatgattgttataataattttacttcttattgagaaaaggacatgtagagataaaaggggaagaaatagacagttactttctaaatgattaa |
213 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29281432 |
gatttcaatataattgttgtaataattttacttcttattgagaaaaggacatgtagagataaaaggggaagaaatagacagttactttctaaatgattaa |
29281531 |
T |
|
| Q |
214 |
attcttctgtgtcaattgaagtttttatgattgtgacaaattaacttccatgaaaaaagaaaaggaaattagtaataaaatattacaaagggatccaata |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29281532 |
attcttctgtgtcaattgaagtttttatgattgtgacaaattaacttccatgaaaaaagaaaaggaaattagtaataaaatattacaaagggatccaata |
29281631 |
T |
|
| Q |
314 |
aaaggatgaaccatcaatcctgaatttgggcatgtccatcttttcatgttttgtatcatcatattgccaagtcagcattaattgatggtggaccctctta |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29281632 |
aaaggatgaaccatcaatcctgaatttgggcatgtccatcttttcatgttctgtatcatcatattgccaagtcagcattaattgatggtagaccctctta |
29281731 |
T |
|
| Q |
414 |
ttgtggtattcttctgaataaataggttggtgattgtgttatgtgggccccatggtccatgttctctgcatgagattgtacctcaaaaagtaagagaaat |
513 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29281732 |
ttgtggcattcttctgaacaaataggttggtgattgtgtaatgtgggccccatggtccatgttctctgcatgagattgtccctcaaaaagtaagagaaat |
29281831 |
T |
|
| Q |
514 |
agtaaggggagggaaaaggttgtcataatctaattttggcaacaaacactgattaaacattaaacaactttaaacactttcacaaattcaattgaaaaag |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29281832 |
agtaaggggagggaaaaggttgtcataatctaattttggcaacaaacactgattaagcattaaacaactttaaacactttcacaaattcaattgaaaagg |
29281931 |
T |
|
| Q |
614 |
aaacatatttttatgaatcatccatgtcattcacctgacaaattttctttatacactttctttttattcaaggtgtctcattatacatgaataataccct |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29281932 |
aaacatatttttatgaatcatccatgtcattcacctaacaaattttctttatacactttctttttattcaaggtgtctcattatacatgaataataccct |
29282031 |
T |
|
| Q |
714 |
tgtatatatgactcctcataaatcaatttgtgttcttaagttcaatttggattagttttttactttaaataaatatttaattcttcatgcatatacgaat |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282032 |
tgtatatatgactcctcataaatcaatttgtgttcttaagttcaatttggattagttttttactttaaataaatatttaattcttcatgcatatacgaat |
29282131 |
T |
|
| Q |
814 |
ttagattgtgtgcggttactatttccagacattcatgcttttaaattgggttgaaatcggaattgtctgatcgtgattcaataactccaaaatcttgtta |
913 |
Q |
| |
|
||||||||| |||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29282132 |
ttagattgtctgcgattactatttccacacattcatgcttttaaattgggtcgaaatcggaattgtctaatcgtgattcaataactccaaaatcttgtta |
29282231 |
T |
|
| Q |
914 |
cccgctcaaatgcgtggaaatcatgccccgcaagacaatctaaatttatgtatatacatatgtgaagtagacaaaagagcacctgaataatatagaaagg |
1013 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282232 |
accactcaaatgcgtggaaatcatgccccacaaggcaatctaaa-ttatgtatatacatatgtgaagtagacaaaagagcacctgaataatatagaaagg |
29282330 |
T |
|
| Q |
1014 |
ttttgaac |
1021 |
Q |
| |
|
|||||||| |
|
|
| T |
29282331 |
ttttgaac |
29282338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 336 - 467
Target Start/End: Complemental strand, 6470612 - 6470481
Alignment:
| Q |
336 |
aatttgggcatgtccatcttttcatgttttgtatcatcatattgccaagtcagcattaattgatggtggaccctcttattgtggtattcttctgaataaa |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| || ||||||||| |||| |||||| ||| ||| |
|
|
| T |
6470612 |
aatttgggcatgtccatcttttcatgttttgcatcatcatattgccaagtcagcatgaattgatgatgatccctcttatcgtggcattcttttgagcaaa |
6470513 |
T |
|
| Q |
436 |
taggttggtgattgtgttatgtgggccccatg |
467 |
Q |
| |
|
| | ||||||||||||| |||| |||||||| |
|
|
| T |
6470512 |
ttgtttggtgattgtgtaatgtatgccccatg |
6470481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 6471395 - 6471307
Alignment:
| Q |
19 |
acagtggaacttaatgtgaatatgcattgtgaggcttgtgctgagcaactcaagagaaagatactccaaatgagaggtatactttgttt |
107 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6471395 |
acagtagaacttaatgtgaccatgcattgtgaggcttgtgctgaacaactcaagagaaagatactccaaatgagaggtataatttgttt |
6471307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 594 - 677
Target Start/End: Original strand, 3508299 - 3508382
Alignment:
| Q |
594 |
cacaaattcaattgaaaaagaaacatatttttatgaatcatccatgtcattcacctgacaaattttctttatacactttctttt |
677 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||| ||| |||||| || ||||||||| ||| | ||||||||||| |
|
|
| T |
3508299 |
cacaaatacaattgaaaaagaaacatagttttatgaatcatgcattccattcatctaacaaattttatttttgcactttctttt |
3508382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 42525526 - 42525454
Alignment:
| Q |
25 |
gaacttaatgtgaatatgcattgtgaggcttgtgctgagcaactcaagagaaagatactccaaatgagaggta |
97 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||||||||| |||||| | ||||||||| |||||| ||||| |
|
|
| T |
42525526 |
gaacttaacgtgaacatgcactgtgaggcttgtgctgagcagctcaaggggaagatactcaaaatgaaaggta |
42525454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University