View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18462_low_11 (Length: 251)
Name: NF18462_low_11
Description: NF18462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18462_low_11 |
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| [»] chr7 (5 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 25642040 - 25642255
Alignment:
| Q |
36 |
tgaataatcattctaaagtgtctgattctccccatcaatcgctttcctcaccaatgccacatcctttttatctttcttttgagagtgaatgcacggaaga |
135 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25642040 |
tgaataatcattctgaagtgtctgattctccccatcaatcgctttcctcaccaatgccacatcctttttatctttcttttgagagtgaacacacggaaga |
25642139 |
T |
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| Q |
136 |
atgctttgatataccacttaatttggaacagaatatggttgatggcaaatattatatttggacaatctatatctctcgggaacactgccattttgtgaaa |
235 |
Q |
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| T |
25642140 |
acgctttgatataccacttaatttggaacagaatgtggttgatggctcaacttatatttggacaatctatatctctcgggaacactgccattttgtgaaa |
25642239 |
T |
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| Q |
236 |
acaggagcacaaatca |
251 |
Q |
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|||||||||||||||| |
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| T |
25642240 |
acaggagcacaaatca |
25642255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 84 - 251
Target Start/End: Complemental strand, 25431605 - 25431438
Alignment:
| Q |
84 |
caccaatgccacatcctttttatctttcttttgagagtgaatgcacggaagaatgctttgatataccacttaatttggaacagaatatggttgatggcaa |
183 |
Q |
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||||| ||||||||||||||||||| || || ||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
25431605 |
caccattgccacatcctttttatctatccttcgagagtgaaaacacagaagaacgctttgatatgccacttaatttggaacagaatatggttgatggtaa |
25431506 |
T |
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| Q |
184 |
atattatatttggacaatctatatctctcgggaacactgccattttgtgaaaacaggagcacaaatca |
251 |
Q |
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| T |
25431505 |
acattatatttggatgatctttatctctcgggaacactgccatttcgtagaaacgggagcacaaatca |
25431438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 92 - 251
Target Start/End: Complemental strand, 25474266 - 25474107
Alignment:
| Q |
92 |
ccacatcctttttatctttcttttgagagtgaatgcacggaagaatgctttgatataccacttaatttggaacagaatatggttgatggcaaatattata |
191 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||| ||||||||| |||| ||||||||||||| | ||| |
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| T |
25474266 |
ccacatcctttttatctttcttttgagagtgaatacacggaagaacgctttgatatgtcactagatttggaacgaaatacggttgatggcaaaaactatc |
25474167 |
T |
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| Q |
192 |
tttggacaatctatatctctcgggaacactgccattttgtgaaaacaggagcacaaatca |
251 |
Q |
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| T |
25474166 |
tttggacaatctttatctctcgggaacactgtcattttgtagaaacaggagtacaaatca |
25474107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 92 - 238
Target Start/End: Original strand, 25449642 - 25449788
Alignment:
| Q |
92 |
ccacatcctttttatctttcttttgagagtgaatgcacggaagaatgctttgatataccacttaatttggaacagaatatggttgatggcaaatattata |
191 |
Q |
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||||||||||||||||| |||||||||||||||| |||||||||| | |||||||| | |||||||||||||| || | ||||||||||||| ||||| |
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| T |
25449642 |
ccacatcctttttatctatcttttgagagtgaatacacggaagaacggtttgatatgcaacttaatttggaactaaacaaggttgatggcaaacattatc |
25449741 |
T |
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| Q |
192 |
tttggacaatctatatctctcgggaacactgccattttgtgaaaaca |
238 |
Q |
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| T |
25449742 |
tatggacaatttatatctctcgggaacactgtcactttgtaaaaaca |
25449788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 90 - 251
Target Start/End: Original strand, 25492304 - 25492465
Alignment:
| Q |
90 |
tgccacatcctttttatctttcttttgagagtgaatgcacggaagaatgctttgatataccacttaatttggaacagaatatggttgatggcaaatatta |
189 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||| | |||||||| |||||| |||||||| || | |||||||| ||| | || |
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| T |
25492304 |
tgccacatcctttttatctttcttttgagagtgaatacaccgaagaacgatttgatatgccacttgatttggaaataaacaaagttgatggaaaaaaata |
25492403 |
T |
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| Q |
190 |
tatttggacaatctatatctctcgggaacactgccattttgtgaaaacaggagcacaaatca |
251 |
Q |
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| T |
25492404 |
tctttgggttatctatatctctcgaaaacactgccattttgtaaaaacaggagcacatatca |
25492465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 251
Target Start/End: Complemental strand, 495575 - 495404
Alignment:
| Q |
80 |
tcctcaccaatgccacatcctttttatctttcttttgagagtgaatgcacggaagaatgctttgatataccacttaatttggaacagaatatggttgatg |
179 |
Q |
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||||| ||| ||||| ||||||||| |||||| ||||| |||||| ||| ||||||||||||||||| ||||||| |||||||| |||| ||| | || |
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| T |
495575 |
tcctcgccactgccatatcctttttgtctttcctttgaaagtgaacacacagaagaatgctttgatatgccacttagtttggaacgaaataaggtggctg |
495476 |
T |
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| Q |
180 |
gcaaatattatatttggacaatctatatctctcgggaacactgccattttgtgaaaacaggagcacaaatca |
251 |
Q |
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|| | ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
495475 |
gctcaaattatatttgggtaatctatatctctcgtgaacactgccattttgtgaaaacaggagcacagatca |
495404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 35093240 - 35093166
Alignment:
| Q |
90 |
tgccacatcctttttatctttcttttgagagtgaatgcacggaagaatgctttgatataccacttaatttggaac |
164 |
Q |
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| T |
35093240 |
tgccacatcctttttatctttcttttgaaagtgaacacacggaagaacgatttgatatgccacttagtttggaac |
35093166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 35101545 - 35101471
Alignment:
| Q |
90 |
tgccacatcctttttatctttcttttgagagtgaatgcacggaagaatgctttgatataccacttaatttggaac |
164 |
Q |
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| T |
35101545 |
tgccacatcctttttatctttcttttgaaagtgaacacacggaagaacgctttgaaatgccgcttagtttggaac |
35101471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 35041430 - 35041356
Alignment:
| Q |
90 |
tgccacatcctttttatctttcttttgagagtgaatgcacggaagaatgctttgatataccacttaatttggaac |
164 |
Q |
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| T |
35041430 |
tgccacatcctttttatctttcttttgaaagtgaacacacagaggaacgcttcgatatgccactcagtttggaac |
35041356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 35101443 - 35101384
Alignment:
| Q |
192 |
tttggacaatctatatctctcgggaacactgccattttgtgaaaacaggagcacaaatca |
251 |
Q |
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|||||| ||| ||||||||||| || || || ||||||||||||||||||||||| |||| |
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| T |
35101443 |
tttggataatttatatctctcgagagcattgtcattttgtgaaaacaggagcacatatca |
35101384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 35152658 - 35152721
Alignment:
| Q |
90 |
tgccacatcctttttatctttcttttgagagtgaatgcacggaagaatgctttgatataccact |
153 |
Q |
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|||||||||||||||||||||||||||| |||||| ||| || ||| |||| ||||| ||||| |
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| T |
35152658 |
tgccacatcctttttatctttcttttgaaagtgaacacacagaggaacgcttcgatatgccact |
35152721 |
T |
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