View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18462_low_12 (Length: 249)

Name: NF18462_low_12
Description: NF18462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18462_low_12
NF18462_low_12
[»] chr8 (15 HSPs)
chr8 (13-249)||(6389759-6389995)
chr8 (39-249)||(6409008-6409218)
chr8 (12-249)||(6368777-6369014)
chr8 (50-249)||(6362002-6362201)
chr8 (25-249)||(6273328-6273552)
chr8 (44-246)||(7457861-7458063)
chr8 (44-246)||(7470263-7470465)
chr8 (49-249)||(6351117-6351317)
chr8 (50-249)||(6287579-6287778)
chr8 (39-249)||(6423034-6423244)
chr8 (39-249)||(6320207-6320417)
chr8 (39-214)||(6330704-6330879)
chr8 (75-129)||(6262239-6262293)
chr8 (77-138)||(6449677-6449738)
chr8 (75-201)||(6456081-6456207)
[»] chr2 (2 HSPs)
chr2 (75-186)||(42692108-42692219)
chr2 (57-189)||(42689611-42689743)
[»] chr5 (1 HSPs)
chr5 (75-126)||(9606276-9606327)
[»] chr7 (2 HSPs)
chr7 (77-126)||(46708220-46708269)
chr7 (77-126)||(46709185-46709234)


Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 6389995 - 6389759
Alignment:
13 gaagactgataagtgggttaaattggaaactcgtacagagttgattgaaacttgcaccaccctcatatggattgcttcagcacttcatgcagctgttaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6389995 gaagactgataagtgggttaaattggaaactcgtacagagttgattgaaacttgcaccaccctcatatggattgcttcagcacttcatgcagctgttaat 6389896  T
113 tttggacaatatccgtacggtggatacattgttaaccgaccaactaaaagcagaagattcatgcctgagaaaggaacccctgagtatgacgagcttgcta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6389895 tttggacaatatccgtacggtggatacattgttaaccgaccaactaaaagcagaagattcatgcctgagaaaggaacccctgagtatgacgagcttgcta 6389796  T
213 aggactacgagaaggcttatctgagaacaatcacacc 249  Q
    |||| ||||||||||||||| ||||||||||||||||    
6389795 aggattacgagaaggcttatttgagaacaatcacacc 6389759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 39 - 249
Target Start/End: Complemental strand, 6409218 - 6409008
Alignment:
39 aaactcgtacagagttgattgaaacttgcaccaccctcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggata 138  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
6409218 aaactcgtgcagagttgattgaaacttgcaccaccctcatttggatggcttcagcacttcatgcagctgttaattttggacaatatccttacggtggata 6409119  T
139 cattgttaaccgaccaactaaaagcagaagattcatgcctgagaaaggaacccctgagtatgacgagcttgctaaggactacgagaaggcttatctgaga 238  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| |||||    
6409118 cattgttaaccgaccaactaaaagtagaagattcatgcctgagaaaggaacccctgagtatgacgagcttgctcaggacttcgagaaggcgtatttgaga 6409019  T
239 acaatcacacc 249  Q
    |||||||||||    
6409018 acaatcacacc 6409008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 6369014 - 6368777
Alignment:
12 tgaagactgataagtgggttaaattggaaactcgtacagagttgattgaaacttgcaccaccctcatatggattgcttcagcacttcatgcagctgttaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6369014 tgaagactgataagtgggttaaattggaaactcgtacagagttgattgaaacttgcaccaccctcatatggattgcttcagcacttcatgcagctgttaa 6368915  T
112 ttttggacaatatccgtacggtggatacattgttaaccgaccaactaaaagcagaagattcatgcctgagaaaggaacccctgagtatgacgagcttgct 211  Q
    |||||||||||||| ||| || || |||||  |||||||||||||||||| || |||||||||||| | ||||||| | | ||||| | | ||||| |||    
6368914 ttttggacaatatcagtatggagggtacatccttaaccgaccaactaaaaccataagattcatgccagtgaaaggatcacatgagtttaaggagctcgct 6368815  T
212 aaggactacgagaaggcttatctgagaacaatcacacc 249  Q
    |||||||||  |||| | ||| |||  |||||||||||    
6368814 aaggactacatgaagacatatttgacgacaatcacacc 6368777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 50 - 249
Target Start/End: Complemental strand, 6362201 - 6362002
Alignment:
50 gagttgattgaaacttgcaccaccctcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggatacattgttaacc 149  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| || |||||||    
6362201 gagttgattgaagcttgcaccaccctcatatggattgcttcagcacttcatgcagcagttaattttggacaatatccgtatggaggatatatcgttaacc 6362102  T
150 gaccaactaaaagcagaagattcatgcctgagaaaggaacccctgagtatgacgagcttgctaaggactacgagaaggcttatctgagaacaatcacacc 249  Q
    ||||||||||||| |||||||||||||||||| | ||| ||||||||||||| |||||||||||||||||| ||||| |||||||||| ||||| |||||    
6362101 gaccaactaaaagtagaagattcatgcctgagcagggatcccctgagtatgatgagcttgctaaggactaccagaagtcttatctgaggacaataacacc 6362002  T

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Target: chr8; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 6273552 - 6273328
Alignment:
25 gtgggttaaattggaaactcgtacagagttgattgaaacttgcaccaccctcatatggattgcttcagcacttcatgcagctgttaattttggacaatat 124  Q
    |||||||||  || ||||||| ||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6273552 gtgggttaagatgcaaactcgcacagagttgattgactcttgcactaccctcatatggattgcttcagcacttcatgcagctgttaattttggacaatat 6273453  T
125 ccgtacggtggatacattgttaaccgaccaactaaaagcagaagattcatgcctgagaaaggaacccctgagtatgacgagcttgctaaggactacgaga 224  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||| |||||| |||||||| |||| |||||||| |||||| ||||| ||||  | |    
6273452 ccgtacggtggttacattcttaaccgaccaactaaaagcagaagattaatgcctaagaaaggatcccccgagtatgatgagctttctaagaactatcaaa 6273353  T
225 aggcttatctgagaacaatcacacc 249  Q
    |||| | | ||||||||||||||||    
6273352 aggcgtttttgagaacaatcacacc 6273328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 44 - 246
Target Start/End: Complemental strand, 7458063 - 7457861
Alignment:
44 cgtacagagttgattgaaacttgcaccaccctcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggatacattg 143  Q
    ||||| |||||||  ||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| ||      
7458063 cgtacggagttgaaagaagcttgcaccattctcatatggattgcttcagcacttcatgcagctgttaattttggacaatatgcgtatggaggatatatcc 7457964  T
144 ttaaccgaccaactaaaagcagaagattcatgcctgagaaaggaacccctgagtatgacgagcttgctaaggactacgagaaggcttatctgagaacaat 243  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||  ||||||||| |||||||||||||||||| ||||| ||||| |||| |||||    
7457963 ttaaccgaccaacaaaaagtagaagattcatgcctgagaaaggatccgttgagtatgatgagcttgctaaggactaccagaagacttatttgaggacaat 7457864  T
244 cac 246  Q
    |||    
7457863 cac 7457861  T

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Target: chr8; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 44 - 246
Target Start/End: Complemental strand, 7470465 - 7470263
Alignment:
44 cgtacagagttgattgaaacttgcaccaccctcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggatacattg 143  Q
    ||||| |||||||  ||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| ||      
7470465 cgtacggagttgaaagaagcttgcaccattctcatatggattgcttcagcacttcatgcagctgttaattttggacaatatgcgtatggaggatatatcc 7470366  T
144 ttaaccgaccaactaaaagcagaagattcatgcctgagaaaggaacccctgagtatgacgagcttgctaaggactacgagaaggcttatctgagaacaat 243  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||  ||| ||||| |||||||||||||||||| ||||| ||||| |||| |||||    
7470365 ttaaccgaccaacaaaaagtagaagattcatgcctgagaaaggatccgttgaatatgatgagcttgctaaggactaccagaagacttatttgaggacaat 7470266  T
244 cac 246  Q
    |||    
7470265 cac 7470263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 49 - 249
Target Start/End: Complemental strand, 6351317 - 6351117
Alignment:
49 agagttgattgaaacttgcaccaccctcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggatacattgttaac 148  Q
    ||||||||| ||| ||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||  |||||    
6351317 agagttgatcgaagcttccaccatccttatatggattgcttcagcacttcatgcagctgttaatttcggacaatatccatatggaggatatatccttaac 6351218  T
149 cgaccaactaaaagcagaagattcatgcctgagaaaggaacccctgagtatgacgagcttgctaaggactacgagaaggcttatctgagaacaatcacac 248  Q
    || ||||| || || |||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| ||||| ||||| |||| ||||||||||    
6351217 cggccaacaaagagtagaagattcatgcctgagaaaggatcacctgagtatgatgagcttgctaaggactaccagaagtcttatttgaggacaatcacac 6351118  T
249 c 249  Q
    |    
6351117 c 6351117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 50 - 249
Target Start/End: Complemental strand, 6287778 - 6287579
Alignment:
50 gagttgattgaaacttgcaccaccctcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggatacattgttaacc 149  Q
    |||||||||||  ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||    
6287778 gagttgattgaggcttgcaccatcctcatatggattgcttcggcacttcatgcggctgttaattttggacaatatccgtacggtggttacattcttaacc 6287679  T
150 gaccaactaaaagcagaagattcatgcctgagaaaggaacccctgagtatgacgagcttgctaaggactacgagaaggcttatctgagaacaatcacacc 249  Q
    ||||||| |||||||||||||| |||||| |||||||| |  |||||||||  |||||| ||||| ||||  | ||||| | | ||||||||||| ||||    
6287678 gaccaacaaaaagcagaagattaatgcctaagaaaggatctgctgagtatgctgagctttctaagaactatcaaaaggcgtttttgagaacaatcccacc 6287579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 39 - 249
Target Start/End: Complemental strand, 6423244 - 6423034
Alignment:
39 aaactcgtacagagttgattgaaacttgcaccaccctcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggata 138  Q
    |||||||| | |||||||| ||| ||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| || || || |||||    
6423244 aaactcgtgcggagttgatcgaagcttccaccatccttatatggattgcttcagcacttcatgcagctgttaattttggacaatacccatatggaggata 6423145  T
139 cattgttaaccgaccaactaaaagcagaagattcatgcctgagaaaggaacccctgagtatgacgagcttgctaaggactacgagaaggcttatctgaga 238  Q
    |||  |||||||||||||||| ||||| ||||||||||||||||||||| |  | |||||||  |||||| ||||||||||| ||||||| ||| |||      
6423144 catccttaaccgaccaactaagagcaggagattcatgcctgagaaaggatcagccgagtatgctgagctttctaaggactaccagaaggcatatttgaag 6423045  T
239 acaatcacacc 249  Q
    |||||||||||    
6423044 acaatcacacc 6423034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 39 - 249
Target Start/End: Complemental strand, 6320417 - 6320207
Alignment:
39 aaactcgtacagagttgattgaaacttgcaccaccctcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggata 138  Q
    ||||| ||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| ||||| || || || |||||    
6320417 aaacttgtacagagttgattgaagcttgcactatcctcatatggattgcttcagcacatcatgcagctgttaattttggtcaatacccatatggaggata 6320318  T
139 cattgttaaccgaccaactaaaagcagaagattcatgcctgagaaaggaacccctgagtatgacgagcttgctaaggactacgagaaggcttatctgaga 238  Q
     ||  |||||||||||||||| ||| | |||  ||||||| |||||||  |  ||||||||||||||||| ||||| |||   ||||||| ||||||||     
6320317 tatacttaaccgaccaactaagagccggagacacatgcctaagaaagggtctgctgagtatgacgagctttctaagaactttcagaaggcgtatctgagg 6320218  T
239 acaatcacacc 249  Q
    |||||||||||    
6320217 acaatcacacc 6320207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 39 - 214
Target Start/End: Complemental strand, 6330879 - 6330704
Alignment:
39 aaactcgtacagagttgattgaaacttgcaccaccctcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggata 138  Q
    ||||| ||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| || || |||||    
6330879 aaacttgtacagagttgattgaagcttgcactatcctcatatggattgcttcagcacatcatgcagctgttaattttggtcaatatccatatggaggata 6330780  T
139 cattgttaaccgaccaactaaaagcagaagattcatgcctgagaaaggaacccctgagtatgacgagcttgctaag 214  Q
     ||  |||||||||||||||||||| | |||  |||||||||||||||  |  ||||||||| ||||||| |||||    
6330779 tatacttaaccgaccaactaaaagccggagacacatgcctgagaaagggtctgctgagtatgccgagctttctaag 6330704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 6262293 - 6262239
Alignment:
75 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgta 129  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
6262293 tcatatggactgcttcagctcttcatgcagctgttaattttggacaatatccgta 6262239  T

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Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 6449738 - 6449677
Alignment:
77 atatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggata 138  Q
    ||||||| |||||| || |||||||||||||||||||| ||||||||||| ||||| |||||    
6449738 atatggactgcttctgctcttcatgcagctgttaatttcggacaatatccttacggaggata 6449677  T

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Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 6456207 - 6456081
Alignment:
75 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggatacattgttaaccgaccaactaaaagcagaagattcat 174  Q
    ||||||||| ||||||||| ||||||||||| ||||| |||||||| ||||| || || ||||| ||  | ||||| ||||||   || |||||||| ||    
6456207 tcatatggactgcttcagctcttcatgcagcagttaactttggacagtatccttatggaggatatatcctgaaccgtccaactcttagtagaagatttat 6456108  T
175 gcctgagaaaggaacccctgagtatga 201  Q
     || ||| ||||||| || ||||||||    
6456107 tccggagcaaggaactccggagtatga 6456081  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 42692219 - 42692108
Alignment:
75 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggatacattgttaaccgaccaactaaaagcagaagattcat 174  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||| | ||||| || |  ||  | ||||| ||||||   || || ||||||||    
42692219 tcatatggattgcttcagctcttcatgcagctgttaattttggacagtattcctacggaggtttaatattaaaccgtccaactctcagtaggagattcat 42692120  T
175 gcctgagaaagg 186  Q
    ||||||||||||    
42692119 gcctgagaaagg 42692108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 189
Target Start/End: Original strand, 42689611 - 42689743
Alignment:
57 ttgaaacttgcaccaccctcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggatacattgttaaccgaccaac 156  Q
    ||||| ||||||| | | |||||||||  |||||||| || || |||||||||||||||||||||||||| ||||| || |  ||| | ||||| |||||    
42689611 ttgaagcttgcactatcatcatatggacggcttcagccctccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaac 42689710  T
157 taaaagcagaagattcatgcctgagaaaggaac 189  Q
    ||  || ||||||||  | |||||| |||||||    
42689711 tatcagtagaagattacttcctgaggaaggaac 42689743  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 9606276 - 9606327
Alignment:
75 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatatcc 126  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||||||||    
9606276 tcatatggactgcttctgctcttcatgcagctgttaattttggacaatatcc 9606327  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 46708269 - 46708220
Alignment:
77 atatggattgcttcagcacttcatgcagctgttaattttggacaatatcc 126  Q
    ||||||||||||||||| || ||||||||||| || ||||||||||||||    
46708269 atatggattgcttcagccctacatgcagctgtaaaatttggacaatatcc 46708220  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 46709234 - 46709185
Alignment:
77 atatggattgcttcagcacttcatgcagctgttaattttggacaatatcc 126  Q
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46709234 atatggattgcttcagctctacatgcagctgtaaactttggacaatatcc 46709185  T

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