View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18462_low_13 (Length: 236)

Name: NF18462_low_13
Description: NF18462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18462_low_13
NF18462_low_13
[»] chr8 (12 HSPs)
chr8 (16-236)||(6389532-6389752)
chr8 (16-227)||(6408781-6408992)
chr8 (16-193)||(6330442-6330619)
chr8 (51-202)||(6361810-6361961)
chr8 (16-202)||(6319980-6320166)
chr8 (16-202)||(6422807-6422993)
chr8 (17-202)||(7470034-7470219)
chr8 (16-202)||(7457631-7457817)
chr8 (51-202)||(6273136-6273287)
chr8 (20-183)||(6368554-6368717)
chr8 (58-202)||(6287394-6287538)
chr8 (39-202)||(6350913-6351076)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 6389532 - 6389752
Alignment:
Q  16 gcatcttcacaggcccattcctgtttctcaatgattcatcactgttcctttcaatgagcttttgctcaatttcagccaacttctttccaaacttcttgaa 115  Q
    |||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6389532 gcatcttcactggcccattcctgtttctcaatgattcatcgttgttcctttcaatgagcttttgctcaatttcagccaacttctttccaaacttcttgaa 6389631  T
Q  116 ggcctctactggctctaaatcgtaagtccaaagatcaccttcgattctgtgtccaatgtattgctcatcagaaacatgtgttgacaattgctccataaca 215  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6389632 ggcctctactggctctgaatcgtaagtccaaagatcaccttcgattctgtgtccaatgtattgctcatcagaaacatgtgttgacaattgctccataaca 6389731  T
Q  216 gttatgttcacaacggtatcc 236  Q
    | |||||||||||||||||||    
T  6389732 gatatgttcacaacggtatcc 6389752  T

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Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 6408781 - 6408992
Alignment:
Q  16 gcatcttcacaggcccattcctgtttctcaatgattcatcactgttcctttcaatgagcttttgctcaatttcagccaacttctttccaaacttcttgaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6408781 gcatcttcacaggcccattcctgtttctcaatgattcatcgttgttcctttcaatgagcttttgctcaatttcagccaacttctttccaaacttcttgaa 6408880  T
Q  116 ggcctctactggctctaaatcgtaagtccaaagatcaccttcgattctgtgtccaatgtattgctcatcagaaacatgtgttgacaattgctccataaca 215  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6408881 ggcctctactggctctgaatcgtaagtccaaagatcaccttcgattctgtgtccaatgtattgctcatcagaaacatgtgatgacaattgctccataaca 6408980  T
Q  216 gttatgttcaca 227  Q
    |  |||||||||    
T  6408981 gacatgttcaca 6408992  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 6330442 - 6330619
Alignment:
Q  16 gcatcttcacaggcccattcctgtttctcaatgattcatcactgttcctttcaatgagcttttgctcaatttcagccaacttctttccaaacttcttgaa 115  Q
    |||| ||||||||||| |  | |||||||||||| |||||| ||||||||||||||||||||  ||||||||||||||||||| |||||||| |||||||    
T  6330442 gcatattcacaggcccgtatcggtttctcaatgactcatcattgttcctttcaatgagctttacctcaatttcagccaacttccttccaaacctcttgaa 6330541  T
Q  116 ggcctctactggctctaaatcgtaagtccaaagatcaccttcgattctgtgtccaatgtattgctcatcagaaacatg 193  Q
     || |||| ||||| | ||||  |||||||||  || |||||  |||| ||||||| |||||||||||||||| ||||    
T  6330542 agcttctaatggctgtgaatctgaagtccaaacctcgccttcatttctctgtccaaggtattgctcatcagaagcatg 6330619  T

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Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 51 - 202
Target Start/End: Original strand, 6361810 - 6361961
Alignment:
Q  51 tcatcactgttcctttcaatgagcttttgctcaatttcagccaacttctttccaaacttcttgaaggcctctactggctctaaatcgtaagtccaaagat 150  Q
    |||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| |||| ||||  ||||| | ||||  ||||||| ||||    
T  6361810 tcatcattgttcctttgaatgagtttttgctcaatttcagccaacttctttccaaacctcttaaaggactcttttggctgtgaatcagaagtccagagat 6361909  T
Q  151 caccttcgattctgtgtccaatgtattgctcatcagaaacatgtgttgacaa 202  Q
    ||||||| ||||| | ||||| |||||||||||||||| ||||  |||||||    
T  6361910 caccttcaattctctctccaaggtattgctcatcagaagcatgccttgacaa 6361961  T

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Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 6319980 - 6320166
Alignment:
Q  16 gcatcttcacaggcccattcctgtttctcaatgattcatcactgttcctttcaatgagcttttgctcaatttcagccaacttctttccaaacttcttgaa 115  Q
    |||||||||||||||| |  | |||||||||||| |||||| |||||||||  |||||||||  ||||||||||||||||||| |||||||| |||||||    
T  6319980 gcatcttcacaggcccgtatcggtttctcaatgactcatcattgttccttttgatgagctttgcctcaatttcagccaacttccttccaaacctcttgaa 6320079  T
Q  116 ggcctctactggctctaaatcgtaagtccaaagatcaccttcgattctgtgtccaatgtattgctcatcagaaacatgtgttgacaa 202  Q
     || |||| ||||| | ||||  ||||||||   ||||||||  |||| ||||||| |||||||||||||||| ||||  |||||||    
T  6320080 agcttctaatggctgtgaatcaaaagtccaagcctcaccttcatttctctgtccaaggtattgctcatcagaagcatgccttgacaa 6320166  T

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Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 6422807 - 6422993
Alignment:
Q  16 gcatcttcacaggcccattcctgtttctcaatgattcatcactgttcctttcaatgagcttttgctcaatttcagccaacttctttccaaacttcttgaa 115  Q
    |||||||||||||||| |  | |||||||||||| || |||  |||||||| ||  ||||||| ||||||||||||||||||| || ||||||||||| |    
T  6422807 gcatcttcacaggcccgtatcggtttctcaatgactcgtcagcgttccttttaactagcttttcctcaatttcagccaacttccttgcaaacttcttgta 6422906  T
Q  116 ggcctctactggctctaaatcgtaagtccaaagatcaccttcgattctgtgtccaatgtattgctcatcagaaacatgtgttgacaa 202  Q
    |||||||  ||||| |  |||  ||||||||||||||||||||||||| |  |||| |||||||||||||||| ||||  |||||||    
T  6422907 ggcctcttttggctgtgcatcagaagtccaaagatcaccttcgattctctccccaaggtattgctcatcagaagcatgccttgacaa 6422993  T

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Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 7470034 - 7470219
Alignment:
Q  17 catcttcacaggcccattcctgtttctcaatgattcatcactgttcctttcaatgagcttttgctcaatttcagccaacttctttccaaacttcttgaag 116  Q
    |||||||||||| ||||| |  || |||| ||  |||||| ||||||||| |||||| |||| ||||||||||| |||||||||||||||||||||| ||    
T  7470034 catcttcacaggtccatttcgattcctcagtgtctcatcattgttcctttgaatgaggtttttctcaatttcagacaacttctttccaaacttcttgtag 7470133  T
Q  117 gcctctactggctctaaatcgtaagtccaaagatcaccttcgattctgtgtccaatgtattgctcatcagaaacatgtgttgacaa 202  Q
    |||| |  ||||| | ||||  ||||||| ||||||||||| ||||| | ||||| |||||| ||||||||| ||||  |||||||    
T  7470134 gcctgttttggctgtgaatcagaagtccagagatcaccttcaattctctctccaaggtattgttcatcagaagcatgccttgacaa 7470219  T

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Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 7457631 - 7457817
Alignment:
Q  16 gcatcttcacaggcccattcctgtttctcaatgattcatcactgttcctttcaatgagcttttgctcaatttcagccaacttctttccaaacttcttgaa 115  Q
    ||||||||||||| ||||| |  || |||| ||  |||||| ||||||||| |||||| |||| ||| |||||||||||||||||||||||||||||| |    
T  7457631 gcatcttcacaggtccatttcgattcctcagtgtctcatcattgttcctttgaatgaggtttttctcgatttcagccaacttctttccaaacttcttgta 7457730  T
Q  116 ggcctctactggctctaaatcgtaagtccaaagatcaccttcgattctgtgtccaatgtattgctcatcagaaacatgtgttgacaa 202  Q
    ||||| |  ||| | | ||||  ||||||| ||||||||||| ||||| | ||||| |||||| ||||||||| ||||  |||||||    
T  7457731 ggcctgttttggttgtgaatcagaagtccagagatcaccttcaattctctctccaaggtattgttcatcagaagcatgccttgacaa 7457817  T

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Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 202
Target Start/End: Original strand, 6273136 - 6273287
Alignment:
Q  51 tcatcactgttcctttcaatgagcttttgctcaatttcagccaacttctttccaaacttcttgaaggcctctactggctctaaatcgtaagtccaaagat 150  Q
    |||||| ||||||||| | |||| ||||| |||||||||||||||||  |||| ||  ||||||| ||||||| ||| | | ||||  ||||||||||||    
T  6273136 tcatcattgttcctttgagtgagtttttgttcaatttcagccaactttgttccgaatctcttgaaagcctctaatggttgtgaatcagaagtccaaagat 6273235  T
Q  151 caccttcgattctgtgtccaatgtattgctcatcagaaacatgtgttgacaa 202  Q
    ||||||| ||||| ||||||| |||||| ||||||||| ||||| |||||||    
T  6273236 caccttcaattctctgtccaaggtattgttcatcagaagcatgtcttgacaa 6273287  T

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Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 6368554 - 6368717
Alignment:
Q  20 cttcacaggcccattcctgtttctcaatgattcatcactgttcctttcaatgagcttttgctcaatttcagccaacttctttccaaacttcttgaaggcc 119  Q
    |||||||||||||| ||||||| ||||||| |||| | ||||||||| ||||| || || ||||||||||  ||| |||||| ||||||| ||| ||||     
T  6368554 cttcacaggcccatacctgtttttcaatgactcattattgttcctttgaatgaactcttcctcaatttcaatcaatttctttgcaaactttttgtaggct 6368653  T
Q  120 tctactggctctaaatcgtaagtccaaagatcaccttcgattctgtgtccaatgtattgctcat 183  Q
    |||||||||| |  |||  |||||||||||||||||||  |||| ||||||| ||||| |||||    
T  6368654 tctactggctttggatcagaagtccaaagatcaccttcagttctttgtccaaggtattcctcat 6368717  T

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Target: chr8; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 58 - 202
Target Start/End: Original strand, 6287394 - 6287538
Alignment:
Q  58 tgttcctttcaatgagcttttgctcaatttcagccaacttctttccaaacttcttgaaggcctctactggctctaaatcgtaagtccaaagatcaccttc 157  Q
    ||||||||| | |||| |||| |||||||||||||| ||||||||||||| ||||||| ||||||  ||| | | ||||  ||||||||  |||||||||    
T  6287394 tgttcctttgagtgagttttttctcaatttcagccagcttctttccaaacctcttgaaagcctcttttggttgtgaatcagaagtccaattatcaccttc 6287493  T
Q  158 gattctgtgtccaatgtattgctcatcagaaacatgtgttgacaa 202  Q
     ||||| ||||||| |||||| ||||||||| ||||| |||||||    
T  6287494 aattctctgtccaaggtattgttcatcagaagcatgtcttgacaa 6287538  T

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Target: chr8; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 39 - 202
Target Start/End: Original strand, 6350913 - 6351076
Alignment:
Q  39 tttctcaatgattcatcactgttcctttcaatgagcttttgctcaatttcagccaacttctttccaaacttcttgaaggcctctactggctctaaatcgt 138  Q
    ||||||||||  |||||| ||||||||| | |||| || || ||||||||||||||||||||||||||| |||||||||| |||  ||| | | ||||      
T  6350913 tttctcaatgtctcatcattgttcctttgagtgagtttctgttcaatttcagccaacttctttccaaacctcttgaaggcttcttttggttgtgaatctg 6351012  T
Q  139 aagtccaaagatcaccttcgattctgtgtccaatgtattgctcatcagaaacatgtgttgacaa 202  Q
    ||||||||   |||||||| ||||| | ||||| |||||||||||||||| ||||  |||||||    
T  6351013 aagtccaattgtcaccttcaattctatctccaaggtattgctcatcagaagcatgccttgacaa 6351076  T

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