View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18463_high_1 (Length: 559)
Name: NF18463_high_1
Description: NF18463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18463_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 4e-58; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 417 - 543
Target Start/End: Original strand, 53791456 - 53791581
Alignment:
| Q |
417 |
ttttcttttctcataaaaagttttcaatcaataatttaaaacctcgctgccctggcttgttattttcatcttggcaataccatgaacaagacatggaaag |
516 |
Q |
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| T |
53791456 |
ttttcttttctcataaaa-gttttcaatcaataatttaaaaccacgctgccctggcttgttattttcatcttggcaataccatgaacaagacatggaaag |
53791554 |
T |
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| Q |
517 |
tctttttccaagaaataatgtttgtgt |
543 |
Q |
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| T |
53791555 |
tctttttccaagaaataatgtttgtgt |
53791581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 283 - 360
Target Start/End: Original strand, 53791075 - 53791152
Alignment:
| Q |
283 |
ttcacattttgggaccatgttggtatgccacaataattctaattttaattctacgtgtattaggtaagttaatactat |
360 |
Q |
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| T |
53791075 |
ttcacattttgggaccatgttggtatgccacaataattctaattttaattctacgtgtattacgtaagttaatactat |
53791152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 53791288 - 53791352
Alignment:
| Q |
355 |
tactatatctctaataaatatcttacaacataaaaataatagagtgaagattcattatagtcttt |
419 |
Q |
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| T |
53791288 |
tactatatctctaataaatatcttacaacataaaaataatagagtaaagattccttatagtcttt |
53791352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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