View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18463_high_3 (Length: 316)

Name: NF18463_high_3
Description: NF18463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18463_high_3
NF18463_high_3
[»] chr1 (2 HSPs)
chr1 (16-304)||(42156164-42156439)
chr1 (149-212)||(38010799-38010861)
[»] chr3 (2 HSPs)
chr3 (135-260)||(25315137-25315261)
chr3 (150-194)||(1640055-1640099)
[»] chr6 (2 HSPs)
chr6 (145-212)||(9665001-9665067)
chr6 (145-262)||(6889405-6889522)
[»] chr4 (2 HSPs)
chr4 (155-213)||(27065611-27065668)
chr4 (155-213)||(27086714-27086771)
[»] scaffold0408 (1 HSPs)
scaffold0408 (145-185)||(10047-10087)
[»] scaffold0161 (1 HSPs)
scaffold0161 (147-227)||(22707-22786)
[»] chr8 (1 HSPs)
chr8 (145-185)||(14099705-14099745)
[»] chr5 (1 HSPs)
chr5 (151-209)||(3726485-3726542)
[»] chr7 (1 HSPs)
chr7 (135-176)||(34144450-34144491)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 42156439 - 42156164
Alignment:
Q  16 agatgtataaattttgtttgagatacctttcccattcttctctggactctgaagttagatattggcataatcagagcttgtttgaccaaacnnnnnnnnc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |    
T  42156439 agatgtataaattttgtttgagatacctttcccattcttctctggactctgaagttagatattggcataatcagagcttgtttgaccaaacttttttttc 42156340  T
Q  116 aactctcatctccttaaggtgatagagcatgcaattagactcaaataaataatttagatatttaatttagaagtaaaatttatattggtttgtcttttct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||    
T  42156339 aactctcatctccttaaggtgatagagcatgcaattagactcaaataaataatttaga-------------agtaaaatttatattggtttgtcttttct 42156253  T
Q  216 tttaattgttttagttggaaattttagctggatctttagtctctaggcctgttaggttattatctattaccactcttatatgtaatatt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42156252 tttaattgttttagttggaaattttagctggatctttagtctctaggcctgttaggttattatctattaccactcttatatgtaatatt 42156164  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 38010861 - 38010799
Alignment:
Q  149 attagactcaaataaataatttagatatttaatttagaagtaaaatttatattggtttgtcttt 212  Q
    |||||||||||||||||||||||  ||||||||||||||||| || ||||||| ||||||||||    
T  38010861 attagactcaaataaataatttacctatttaatttagaagtataa-ttatattagtttgtcttt 38010799  T

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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 135 - 260
Target Start/End: Complemental strand, 25315261 - 25315137
Alignment:
Q  135 tgatagagcatgcaattagactcaaataaataatttagatatttaatttagaagtaaaatttatattggtttgtcttttcttttaattg-ttttagttgg 233  Q
    ||||| || |||||||| |||||||||||||||||||||||||||| ||||||||  || ||||||| | |||| ||| | |||| ||| ||||||||||    
T  25315261 tgataaaggatgcaatttgactcaaataaataatttagatatttaa-ttagaagtgcaa-ttatattaggttgtttttccatttagttgtttttagttgg 25315164  T
Q  234 aaattttagctggatctttagtctcta 260  Q
    |  |||||| |||||||||||||||||    
T  25315163 accttttagttggatctttagtctcta 25315137  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 1640055 - 1640099
Alignment:
Q  150 ttagactcaaataaataatttagatatttaatttagaagtaaaat 194  Q
    |||||||||||||||||||| || |||||| ||||||||| ||||    
T  1640055 ttagactcaaataaataattaaggtatttagtttagaagtgaaat 1640099  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 9665067 - 9665001
Alignment:
Q  145 tgcaattagactcaaataaataatttagatatttaatttagaagtaaaatttatattggtttgtcttt 212  Q
    |||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||    
T  9665067 tgcaattagattaaaataaataatttagctatttaatttagaagtaaaa-ttatattagtttgtcttt 9665001  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 262
Target Start/End: Original strand, 6889405 - 6889522
Alignment:
Q  145 tgcaattagactcaaataaataatttagatatttaatttagaagtaaaatttatattggtttgtcttttcttttaattgtt-ttagttggaaattttagc 243  Q
    ||||| |||||||||||||||||||||| |||||| |||| |||||||| |||| || |||||||||| |||| | ||||| |||||||||  ||| ||     
T  6889405 tgcaactagactcaaataaataatttagctatttagtttataagtaaaa-ttatgttagtttgtctttcctttgagttgttgttagttggacctttaagt 6889503  T
Q  244 tggatctttagtctctagg 262  Q
    ||| |||||||||| ||||    
T  6889504 tgggtctttagtctttagg 6889522  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 27065611 - 27065668
Alignment:
Q  155 ctcaaataaataatttagatatttaatttagaagtaaaatttatattggtttgtctttt 213  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||| |||| ||||||    
T  27065611 ctcaaataaataatttagatatttaatttataagtaaaa-ttatattagtttatctttt 27065668  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 27086714 - 27086771
Alignment:
Q  155 ctcaaataaataatttagatatttaatttagaagtaaaatttatattggtttgtctttt 213  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||| |||| ||||||    
T  27086714 ctcaaataaataatttagatatttaatttataagtaaaa-ttatattagtttatctttt 27086771  T

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Target: scaffold0408 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 10047 - 10087
Alignment:
Q  145 tgcaattagactcaaataaataatttagatatttaatttag 185  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  10047 tgcaactagactcaaataaataatttagatatttagtttag 10087  T

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Target: scaffold0161 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 22707 - 22786
Alignment:
Q  147 caattagactcaaataaataatttagatatttaatttagaagtaaaatttatattggtttgtcttttcttttaattgtttt 227  Q
    |||||||||| |||||||| ||||||||||| | |||| |||||||| |||| || || ||||||| |||| |||||||||    
T  22707 caattagacttaaataaatgatttagatattaagtttataagtaaaa-ttattttagtctgtctttcctttaaattgtttt 22786  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 14099705 - 14099745
Alignment:
Q  145 tgcaattagactcaaataaataatttagatatttaatttag 185  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  14099705 tgcaactagactcaaataaataatttagatatttagtttag 14099745  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 3726542 - 3726485
Alignment:
Q  151 tagactcaaataaataatttagatatttaatttagaagtaaaatttatattggtttgtc 209  Q
    |||||||||||||||||||||| |||||| || ||||||| || ||||||| |||||||    
T  3726542 tagactcaaataaataatttagttatttatttgagaagtataa-ttatattagtttgtc 3726485  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 34144450 - 34144491
Alignment:
Q  135 tgatagagcatgcaattagactcaaataaataatttagatat 176  Q
    |||||||| |||||||||| ||||||| ||||||||||||||    
T  34144450 tgatagagaatgcaattaggctcaaatgaataatttagatat 34144491  T

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