View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18463_low_5 (Length: 267)
Name: NF18463_low_5
Description: NF18463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18463_low_5 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 34139767 - 34140027
Alignment:
| Q |
7 |
tttctatatttttcttttatcaataacttctatcaagaatagtaatactaattaaagttaagcaatccataaaagtgattaaaacaaacacagtataaaa |
106 |
Q |
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| T |
34139767 |
tttctatatttttcttttatcaataacttctatcaagaatagtaatactaattaaagttaagcaatccataaaagtgactaaaacaaacacagtataaaa |
34139866 |
T |
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| Q |
107 |
ttatgtcaaaagtacctgaataataccgtcaatgttgataatgtacggatctcgggtaggttttacaaaaacccattgttgatctgatttacgcttcact |
206 |
Q |
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| T |
34139867 |
ttatgtcaaaagtacctgaataataccgccaatgttgataatatacggatctcgggtaggttttacaagaacccgttgttgatctgttttacgcttcact |
34139966 |
T |
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| Q |
207 |
tcaagaccttcaacctcatttagggtaagaatagtcaaggcaccagcatccttgtgtcttc |
267 |
Q |
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| T |
34139967 |
tcaagaccttcaacctcatttagggtaagaatagtcaaggcaccagcatccttgtgtcttc |
34140027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 115 - 264
Target Start/End: Original strand, 34131026 - 34131175
Alignment:
| Q |
115 |
aaagtacctgaataataccgtcaatgttgataatgtacggatctcgggtaggttttacaaaaacccattgttgatctgatttacgcttcacttcaagacc |
214 |
Q |
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| T |
34131026 |
aaagtacctgaatgatatcaccaacattgataatgtaagcatctggggtaggtttcacaagaacccattgttggtctgatttacgcttcacttcaagtcc |
34131125 |
T |
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| Q |
215 |
ttcaacctcatttagggtaagaatagtcaaggcaccagcatccttgtgtc |
264 |
Q |
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| T |
34131126 |
tccaacctcatcttgggcaagaatagttaaggcaccagcatccttgtgtc |
34131175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 165 - 259
Target Start/End: Original strand, 34142571 - 34142665
Alignment:
| Q |
165 |
ggttttacaaaaacccattgttgatctgatttacgcttcacttcaagaccttcaacctcatttagggtaagaatagtcaaggcaccagcatcctt |
259 |
Q |
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| T |
34142571 |
ggtttcacaagaacccactgttgatctgttttccgcttcacttcaagtcctccaacctcatcttgggcaagaatagttaaggcaccagaatcctt |
34142665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 34125968 - 34126036
Alignment:
| Q |
199 |
gcttcacttcaagaccttcaacctcatttagggtaagaatagtcaaggcaccagcatccttgtgtcttc |
267 |
Q |
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| T |
34125968 |
gcttcacttcaagaccagcaacctcatcttgggcaagaatagttaaggcaccagcatccttgtgtcttc |
34126036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 264
Target Start/End: Original strand, 34136716 - 34136866
Alignment:
| Q |
114 |
aaaagtacctgaataataccgtcaatgttgataatgtacggatctcgggtaggttttacaaaaacccattgttgatctgatttacgcttcacttcaagac |
213 |
Q |
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| T |
34136716 |
aaaagtacctggataatatcacaaacgttgataatgtaagcatctgaggtaggtttcacaagaacccactcttgtgatgctttgtgcttcacttcaagac |
34136815 |
T |
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| Q |
214 |
cttcaacctcatttagggtaagaatagtcaaggcaccagcatccttgtgtc |
264 |
Q |
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| T |
34136816 |
ccccaacatcatcttgggcaagaatagttaaggcaccagcatccttgtgtc |
34136866 |
T |
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