View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18464_high_1 (Length: 483)
Name: NF18464_high_1
Description: NF18464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18464_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 277 - 466
Target Start/End: Original strand, 16149629 - 16149818
Alignment:
| Q |
277 |
gagagacatgtatatgaactaactttcattaaccattgaaatgtagacaatgtttcatttcgaatgagcgcacaaccaaacaatattgttctgccgtgat |
376 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16149629 |
gagagagatgtatatgaacttactttcattaaccattgaaatgtagacaccgtttcatttcgaatgagcgcacaaccaaacaatattgttctgccgtgat |
16149728 |
T |
|
| Q |
377 |
tgtcgactccaacaaaaatgccaaaaggcatattataagtatttaccttgtaagtagtatcaaatgcaacagcatctccatactgttggt |
466 |
Q |
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| T |
16149729 |
tgtcgactccaacaaaaatgccaaaaggcatattataagtatttaccttgtaagtagtatcaaatgcaacagcatctccatactgttggt |
16149818 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 2 - 182
Target Start/End: Original strand, 16149355 - 16149535
Alignment:
| Q |
2 |
atgagaaatatcgatttcgaagaattgaagtaaaccaaccactaaatttagcactaatgtgccatatacaaaaagcatgttttgtggacggcatttcaaa |
101 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16149355 |
atgagaaatatctatttcgaagaattgaagtaaaccaaccactaaatttagcagtaatgtgccatatacaaaaagcatgttttgtggatggcatttcaaa |
16149454 |
T |
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| Q |
102 |
agcaatagcttgagtcatccatggatcttgatcagtaatgattggctttggaggcttcttcatgagagtaacaaaagtctg |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16149455 |
agcaatagcttgagtcatccatggatcttgatcagtaatgattgtctttggaggcttcttcatgagagtaacaaaagtctg |
16149535 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 4651961 - 4652144
Alignment:
| Q |
1 |
tatgagaaatatcgatttcgaagaattgaagtaaaccaaccactaaatttagcactaatgtgccatatacaaaaagcatgttttgtggacggcatttcaa |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4651961 |
tatgagaaatatcgatttcgaagaattgaagtaaaccaaccactcaatttagcagtaatgtgccatatacaaaaagcatgttttgtggatggcatttcaa |
4652060 |
T |
|
| Q |
101 |
aagcaatagcttgagtcatccatggatcttgatcagtaatgattggc-tttggaggcttcttcatgagagtaacaaaagtctgg |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4652061 |
aagcaatagcttgagtcatccatggatcttgatcagtaatgattggcttttggaggcttcttcatgagagtaacaaaagtctgg |
4652144 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 277 - 457
Target Start/End: Original strand, 4652238 - 4652404
Alignment:
| Q |
277 |
gagagacatgtatatgaactaactttcattaaccattgaaatgtagacaatgtttcatttcgaatgagcgcacaaccaaacaatattgttctgccgtgat |
376 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4652238 |
gagagagatgtatatgaactaactttcattaaccattgaaatgtagacaatgtttcatttcgaatgagcgcacaaccaaacaat--------------at |
4652323 |
T |
|
| Q |
377 |
tgtcgactccaacaaaaatgccaaaaggcatattataagtatttaccttgtaagtagtatcaaatgcaacagcatctccat |
457 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||| ||||||||| |
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| T |
4652324 |
tgtcgattccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaaatagtctcaaatgcaacatcatctccat |
4652404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 23302706 - 23302525
Alignment:
| Q |
2 |
atgagaaatatcgatttcgaagaattgaagtaaaccaaccactaaatttagcactaatgtgccatatacaaaaagcatgttttgtggacggcatttcaaa |
101 |
Q |
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|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23302706 |
atgagaaatatctatttcgaagaattgaagtaatccaaccactaaatttagcagtaatgtgccatatacaaaaagcatgttttgtggatggcatttcaaa |
23302607 |
T |
|
| Q |
102 |
agcaatagcttgagtcatccatggatcttgatcagtaatgattggctttggaggcttcttcatgagagtaacaaaagtctgg |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23302606 |
agcaatagcttgagtcatccatggatcttgatcagtaatgattgtctttggaggcttcttcatgagagtaacaaaagtctgg |
23302525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 277 - 439
Target Start/End: Complemental strand, 23302430 - 23302268
Alignment:
| Q |
277 |
gagagacatgtatatgaactaactttcattaaccattgaaatgtagacaatgtttcatttcgaatgagcgcacaaccaaacaatattgttctgccgtgat |
376 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23302430 |
gagagagatgtatatgaacttactttcattaaccattgaaatgtagacactgtttcatttcgaatgagcgcacaaccaaacaatattgttctgccgtgat |
23302331 |
T |
|
| Q |
377 |
tgtcgactccaacaaaaatgccaaaaggcatattataagtatttaccttgtaagtagtatcaa |
439 |
Q |
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|||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23302330 |
tgtcgattacaacaaagatgccaaaaggcatattataagtatttaccttgtaagtagtatcaa |
23302268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 452
Target Start/End: Original strand, 44680212 - 44680276
Alignment:
| Q |
388 |
acaaaaatgccaaaaggcatattataagtatttaccttgtaagtagtatcaaatgcaacagcatc |
452 |
Q |
| |
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|||||||| ||||| ||||| | ||||| ||| |||||||| |||||||||||| ||||| |||| |
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| T |
44680212 |
acaaaaatcccaaatggcatttcataagaattgaccttgtatgtagtatcaaatacaacaacatc |
44680276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 452
Target Start/End: Complemental strand, 14198218 - 14198154
Alignment:
| Q |
388 |
acaaaaatgccaaaaggcatattataagtatttaccttgtaagtagtatcaaatgcaacagcatc |
452 |
Q |
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|||||||| ||||| ||||| | ||||| ||| |||||||| |||||||||||| ||||| |||| |
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| T |
14198218 |
acaaaaatcccaaatggcatttcataagaattgaccttgtatgtagtatcaaatacaacaacatc |
14198154 |
T |
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