View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18464_high_13 (Length: 250)

Name: NF18464_high_13
Description: NF18464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18464_high_13
NF18464_high_13
[»] chr8 (3 HSPs)
chr8 (75-225)||(44667629-44667781)
chr8 (6-83)||(5538436-5538515)
chr8 (104-225)||(6816851-6816978)
[»] chr6 (1 HSPs)
chr6 (104-225)||(34518754-34518880)
[»] scaffold0003 (1 HSPs)
scaffold0003 (6-83)||(8966-9041)
[»] chr7 (3 HSPs)
chr7 (6-83)||(16420254-16420329)
chr7 (77-169)||(28382724-28382816)
chr7 (75-169)||(28387076-28387170)
[»] chr4 (1 HSPs)
chr4 (75-188)||(28657501-28657613)
[»] chr3 (2 HSPs)
chr3 (182-250)||(1310237-1310307)
chr3 (42-83)||(19932296-19932337)
[»] chr2 (1 HSPs)
chr2 (87-175)||(2037938-2038026)
[»] chr5 (1 HSPs)
chr5 (16-55)||(37940550-37940589)
[»] chr1 (4 HSPs)
chr1 (16-55)||(18901448-18901487)
chr1 (42-83)||(18901508-18901549)
chr1 (42-81)||(51784794-51784833)
chr1 (16-46)||(51784859-51784889)
[»] scaffold0004 (1 HSPs)
scaffold0004 (170-225)||(189050-189106)


Alignment Details
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 44667629 - 44667781
Alignment:
Q  75 agaaagtagtaaatacaacttcttccctattcatatacccatgacaccccactttccactccatgatttagtcccacgtttttaggaagaaagttagtga 174  Q
    ||||||||| | |||||||||||||||| || ||||  ||||||||| |||||||||||||||||||||||| |||| |||||||||||| ||||||||     
T  44667629 agaaagtaggagatacaacttcttccctgtttatatgaccatgacacaccactttccactccatgatttagttccacatttttaggaagagagttagtgg 44667728  T
Q  175 gagagttattataataa-cggttcctagtc-ttttcacacacatccattctat 225  Q
    ||||||||||| ||||| ||||||||| || ||||||||||||  ||||||||    
T  44667729 gagagttattagaataaccggttcctattcattttcacacacactcattctat 44667781  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 5538515 - 5538436
Alignment:
Q  6 gtcgaacaaaatgtgccactagatattactagctagtatttattagagtaata--tataataagatcagcaagaaagtag 83  Q
    |||||| || |||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||    
T  5538515 gtcgaaaaatatgtgccattagatattactagctagtatttattagagtaatatatataataagattagcaagaaagtag 5538436  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 225
Target Start/End: Original strand, 6816851 - 6816978
Alignment:
Q  104 ttcatatacccatgacaccccactttccactccatgatttagtcccacgttttt----aggaagaaagttagtgagagagttattataataa-cggttcc 198  Q
    |||||||  ||||||||| |||||||||||||||||| ||||| |||| |||||    ||||||  ||| |||||||||||||| ||||||| ||||||     
T  6816851 ttcatatgaccatgacacaccactttccactccatgaattagttccacatttttagcaaggaaggtagtgagtgagagagttataataataaccggttct 6816950  T
Q  199 tagtc-ttttcacacacatccattctat 225  Q
    || || |||| ||||||| |||||||||    
T  6816951 tattctttttaacacacacccattctat 6816978  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 34518880 - 34518754
Alignment:
Q  104 ttcatatacccatgacaccccactttccactccatgatttagtcccacgtttttaggaagaaagtt----agtgagagagttattataataacggttcct 199  Q
    |||||||  ||||||||| |||||||||||||||||||||||| |||| ||||||| ||| |||||    ||||| ||||||||||||||||||||||||    
T  34518880 ttcatatgaccatgacacaccactttccactccatgatttagttccacatttttagcaaggaagttagcgagtgaaagagttattataataacggttcct 34518781  T
Q  200 agtc-ttttcacacacatccattctat 225  Q
    | || |||||||||| | |||||||||    
T  34518780 attctttttcacacatacccattctat 34518754  T

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Target: scaffold0003 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 8966 - 9041
Alignment:
Q  6 gtcgaacaaaatgtgccactagatattactagctagtatttattagagtaatatataataagatcagcaagaaagtag 83  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  8966 gtcgaaaaatatgtgccactagatattactagctagtatttattagagta--atataataagattagcaagaaagtag 9041  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 16420254 - 16420329
Alignment:
Q  6 gtcgaacaaaatgtgccactagatattactagctagtatttattagagtaatatataataagatcagcaagaaagtag 83  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  16420254 gtcgaaaaatatgtgccactagatattactagctagtatttattagagta--atataataagattagcaagaaagtag 16420329  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 28382724 - 28382816
Alignment:
Q  77 aaagtagtaaatacaacttcttccctattcatatacccatgacaccccactttccactccatgatttagtcccacgtttttaggaagaaagtt 169  Q
    ||||||| | |||||||||||||||| |||||||  || |||||| |||||||||||||||||||||||| ||||  |||||||||| |||||    
T  28382724 aaagtaggagatacaacttcttccctgttcatatgaccgtgacacaccactttccactccatgatttagttccactattttaggaaggaagtt 28382816  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 28387076 - 28387170
Alignment:
Q  75 agaaagtagtaaatacaacttcttccctattcatatacccatgacaccccactttccactccatgatttagtcccacgtttttaggaagaaagtt 169  Q
    ||||||||||| |||||||||||||| |||||||||  || ||||||  ||||||||||||||||||||||| |||   |||||||||| |||||    
T  28387076 agaaagtagtagatacaacttcttccttattcatatgaccgtgacacatcactttccactccatgatttagttccattattttaggaaggaagtt 28387170  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 28657613 - 28657501
Alignment:
Q  75 agaaagtagtaaatacaacttcttccctattcatatacccatgacaccccactttccactccatgatttagtcccacgtttttaggaagaaagttagtga 174  Q
    ||||||||| | ||||| |||||||| |||||||||  ||| ||||| |||||||||||||||||||||||| |||| ||||||||||  ||||||  ||    
T  28657613 agaaagtaggagatacagcttcttccttattcatatgaccacgacacaccactttccactccatgatttagttccacttttttaggaaagaagtta-cga 28657515  T
Q  175 gagagttattataa 188  Q
    ||||||||||||||    
T  28657514 gagagttattataa 28657501  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 1310237 - 1310307
Alignment:
Q  182 attataataacggttcctagtc-ttttcacacacatcca-ttctattctgcgaacaagaaatacgtagaga 250  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  1310237 attataataacggttcctagtccttttcacacacatccacttctattctgcgaacaagaaatacatagaga 1310307  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 19932296 - 19932337
Alignment:
Q  42 tatttattagagtaatatataataagatcagcaagaaagtag 83  Q
    ||||||||| |||||||||||||||||| ||||| |||||||    
T  19932296 tatttattaaagtaatatataataagattagcaataaagtag 19932337  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 2037938 - 2038026
Alignment:
Q  87 atacaacttcttccctattcatatacccatgacaccccactttccactccatgatttagtcccacgtttttaggaagaaagttagtgag 175  Q
    |||||||||||||| | |||||||   |||||||| ||||||||||| |||||||||||| |||| ||||||| ||| |||||||||||    
T  2037938 atacaacttcttccatgttcatatgatcatgacacaccactttccaccccatgatttagttccacatttttagcaaggaagttagtgag 2038026  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 37940589 - 37940550
Alignment:
Q  16 atgtgccactagatattactagctagtatttattagagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37940589 atgtgccactagatattactagctagtatttattagagta 37940550  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 18901448 - 18901487
Alignment:
Q  16 atgtgccactagatattactagctagtatttattagagta 55  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  18901448 atgtgacactagatattactagctagtatttattagagta 18901487  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 18901508 - 18901549
Alignment:
Q  42 tatttattagagtaatatataataagatcagcaagaaagtag 83  Q
    ||||||||| |||||||||||||||||| |||||||||||||    
T  18901508 tatttattaaagtaatatataataagattagcaagaaagtag 18901549  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 51784833 - 51784794
Alignment:
Q  42 tatttattagagtaatatataataagatcagcaagaaagt 81  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  51784833 tatttattaaagtaatatataataagattagcaagaaagt 51784794  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 51784889 - 51784859
Alignment:
Q  16 atgtgccactagatattactagctagtattt 46  Q
    |||||||||||||||||||||||||||||||    
T  51784889 atgtgccactagatattactagctagtattt 51784859  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 189106 - 189050
Alignment:
Q  170 agtgagagagttattataataacggttcctagt-cttttcacacacatccattctat 225  Q
    |||||||||||||||||||||| |||||||| |  |||||||||| | |||||||||    
T  189106 agtgagagagttattataataatggttcctattgtttttcacacatacccattctat 189050  T

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