View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18464_high_15 (Length: 239)
Name: NF18464_high_15
Description: NF18464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18464_high_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 8797357 - 8797590
Alignment:
| Q |
10 |
catcatcatcattggaggacatagcccaccactgttttctccaaaagcacccatcacataagaacaacttccattagaactaccctccattgaattaata |
109 |
Q |
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| T |
8797357 |
catcatcatcattggaggacatagcccaccactgttttctccaaaagcacccatcacataagaacaacttccattagaactaccctccattgaattaata |
8797456 |
T |
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| Q |
110 |
ctc--------actcacttagccacaataacacttcctttttattaccctttttgccttctaggtcagatttttctttctctcacttgaatgaatgatat |
201 |
Q |
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| T |
8797457 |
ctcactcactcactcacttagccacaataacacttcctttttattaccctttttgccttctaggtcagatttttctttctctcact----tgaatgatat |
8797552 |
T |
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| Q |
202 |
taatattgaagatgtttttgtttcacacaagggtcacc |
239 |
Q |
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| T |
8797553 |
taatattgaagatgtttttgtttcacacaagggtcacc |
8797590 |
T |
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