View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18464_high_5 (Length: 388)
Name: NF18464_high_5
Description: NF18464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18464_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 145 - 370
Target Start/End: Complemental strand, 33634084 - 33633859
Alignment:
| Q |
145 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgttttcctccgattctcctccgatctcaacttctcctacgtcattc |
244 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
33634084 |
gttcgcatccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgctttcctccgattctcctccgatctcaacttctccgacgtcgttc |
33633985 |
T |
|
| Q |
245 |
tcaccgttgacttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttctgttttatgctattacttaatcgatgcaactgaa |
344 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33633984 |
tcaccgttgccttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttctgttttatgctattacttaatcgatgcaactgaa |
33633885 |
T |
|
| Q |
345 |
ttttcattatcggaagtgacgaagct |
370 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
33633884 |
ttttcattatcggaagtgacgaagct |
33633859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 33634231 - 33634151
Alignment:
| Q |
1 |
agataattcaaacaaatggcgggaacagttgcagtaagatcaaactcactgagtgacgagtgggaaatttcgttcgcacga |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33634231 |
agataattcaaacaaatggcgggaacagttgcagtaagatcaaactcactgagtgacgagtgggaaatttcgttcgcacga |
33634151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 145 - 370
Target Start/End: Original strand, 29191750 - 29191974
Alignment:
| Q |
145 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgttttcctccgattctcctccgatctcaacttctcctacgtcattc |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||| | | |
|
|
| T |
29191750 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgctttcctccgtttctcctccgatctcaacttctccgatgtcgtcc |
29191849 |
T |
|
| Q |
245 |
tcaccgttgacttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttctgttttatgctattacttaatcgatgcaactgaa |
344 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
29191850 |
tcaccgttgcattcaacgccaaactccttgtaactccgataacttttcctttttcgatttcgtttctgtttt-cgctattacgtaatccatgcaactgaa |
29191948 |
T |
|
| Q |
345 |
ttttcattatcggaagtgacgaagct |
370 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
29191949 |
ttttgattatcggaagtgacgaagct |
29191974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 29191601 - 29191683
Alignment:
| Q |
5 |
aattcaaacaaatggcgggaacagttgcagtaagatcaa---------actcactgagtgacgagtgggaaatttcgttcgca |
78 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
29191601 |
aattcaaaaaaatggcgggaacagttgcagtgagatcaacaacaacaaactcactgagtgacgagtgggaaatttccttcgca |
29191683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University