View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18464_high_6 (Length: 348)
Name: NF18464_high_6
Description: NF18464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18464_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 49830681 - 49831003
Alignment:
| Q |
18 |
tttgagtcactgttcaactaagtatttnnnnnnnggattttactattaatttacagattctagcttaacaaatggagcctaaaatattcaattaatatga |
117 |
Q |
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| T |
49830681 |
tttgagtcactgttcaactaagtgtttaaaaaaaggattttactattaatttacagattctagcttaacaaatggagcctaaaattttcaattaatatga |
49830780 |
T |
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| Q |
118 |
ggcttgttattgattcattaagctgaaatagctcgtgacttaggtaagttgaactaagcaaataagtttgatatcttacttatgttagccgagtttgatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49830781 |
ggcttgttattgattcattaagctgaaatagctcgtgacttaggtaagttgaactaagcaaataagtttgatatcttacttatgatagccgagtttgatc |
49830880 |
T |
|
| Q |
218 |
taggcttaggttgaattactacgagcattactcgtggaactgttttacacgtaatcagtttccttaggttaaatataatgcatgcattacatgatctcca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49830881 |
taggcttaggttgaattactacgagcattactcgtggaactgttttgcacttaatcagtttccttaggttaaatataatgcatgcattacatgatgtcca |
49830980 |
T |
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| Q |
318 |
gttaacattgattatgatgatgt |
340 |
Q |
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||||||||||||||||||||||| |
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| T |
49830981 |
gttaacattgattatgatgatgt |
49831003 |
T |
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