View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18464_low_15 (Length: 250)
Name: NF18464_low_15
Description: NF18464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18464_low_15 |
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| [»] scaffold0114 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0166 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 42907 - 43146
Alignment:
| Q |
1 |
gactacagaaactttggaacacggatgcaccatggtcgctactctctttggggaggtgttattatgagttttattttgcttctgagtccgacatgcactc |
100 |
Q |
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|||||||||||||||||||||| | |||||| |||||||| ||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| || |
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| T |
42907 |
gactacagaaactttggaacaccgctgcaccgtggtcgctgctctctttggggaggggctattacgagttttattttgcttctgagtccgacatgcgcta |
43006 |
T |
|
| Q |
101 |
tatgtgggcaaagggaactactattttgaaacctggtgttttacgtctgtttgaatggaggaaagactttaatatgcatagaaagaaaaatacgcacgct |
200 |
Q |
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| T |
43007 |
tgtgtgggcaaatggaactactattttgaaacctggtgttttgcgtctgtttgaatggaggaaagattttaatatgcatagacagaaaaatacgcacgct |
43106 |
T |
|
| Q |
201 |
caagtctggattcagttgattgaactcccacaagagtatt |
240 |
Q |
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||||||||||||| || ||||||||||||||||||||||| |
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| T |
43107 |
caagtctggattcggtggattgaactcccacaagagtatt |
43146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 10077 - 9843
Alignment:
| Q |
6 |
cagaaactttggaacacggatgcaccatggtcgctactctctttggggaggtgttattatgagttttattttgcttctgagtccgacatgcactctatgt |
105 |
Q |
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||||||| ||||||||||| |||||||||||| || |||||||| |||||| ||||||| ||||||||||||||||| || | || |||| ||| ||| |
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| T |
10077 |
cagaaacattggaacacggctgcaccatggtctctgctctctttagggaggggttattacgagttttattttgcttccgaagctgatatgcgctccgtgt |
9978 |
T |
|
| Q |
106 |
gggcaaagggaactactattttgaaacctggtgttttacgtctgtttgaatggaggaaagactttaatatgcatagaaagaaaaatacgcacgctcaagt |
205 |
Q |
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|||| ||| | || |||||||||||||||| |||| || ||||||| ||||| ||||||||||||||||| | | ||||| |||| ||| ||||||| |
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| T |
9977 |
gggcgaagcgcacagttattttgaaacctggtattttgcgattgtttgagtggagaaaagactttaatatgcacaaacagaaagatacacacactcaagt |
9878 |
T |
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| Q |
206 |
ctggattcagttgattgaactcccacaagagtatt |
240 |
Q |
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| T |
9877 |
ttggattcgtctgattgaactccctcaagaatatt |
9843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 25520 - 25753
Alignment:
| Q |
6 |
cagaaactttggaacacggatgcaccatggtcgctactctctttggggaggtgttattatgagttttattttgcttctgagtccgacatgcactctatgt |
105 |
Q |
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||||||| ||||||||||| |||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||| | || |||| ||| ||| |
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| T |
25520 |
cagaaacattggaacacggctgcaccatggtctctactctctttagggaggggttattacgagttttattttgcttctgaagctgatatgcgctccgtgt |
25619 |
T |
|
| Q |
106 |
gggcaaagggaactactattttgaaacctggtgttttacgtctgtttgaatggaggaaagactttaatatgcatagaaagaaaaatacgcacgctcaagt |
205 |
Q |
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|||| ||||| || |||||||||||||||| |||| || |||| | ||||| |||||||||||| |||| | | |||||||||| || |||||||| |
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| T |
25620 |
gggcgaagggcacggttattttgaaacctggtattttgcgattgttcg-gtggagaaaagactttaatgtgcacaaacagaaaaatacacatgctcaagt |
25718 |
T |
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| Q |
206 |
ctggattcagttgattgaactcccacaagagtatt |
240 |
Q |
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||||||| ||||||||||||| ||||| |||| |
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| T |
25719 |
ttggattcgtctgattgaactcccccaagaatatt |
25753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 12982 - 12873
Alignment:
| Q |
131 |
acctggtgttttacgtctgtttgaatggaggaaagactttaatatgcatagaaagaaaaatacgcacgctcaagtctggattcagttgattgaactccca |
230 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
12982 |
acctggtgttttgcgtctgtttgaatggaagaaagactttaatatgcataaacagaaaaatacgcacgctcaagtttggattcgtctgattgaactccca |
12883 |
T |
|
| Q |
231 |
caagagtatt |
240 |
Q |
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||| |||||| |
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| T |
12882 |
caaaagtatt |
12873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 24770601 - 24770493
Alignment:
| Q |
131 |
acctggtgttttacgtctgtttgaatggaggaaagactttaatatgcatagaaagaaaaatacgcacgctcaagtctggattcagttgattgaactccca |
230 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
24770601 |
acctggtgttttgcgtctgtttgaatggaagaaagactttaatatgcataaacagaaaaatacgcacgctcaagt-tggattcgtctgattgaactccca |
24770503 |
T |
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| Q |
231 |
caagagtatt |
240 |
Q |
| |
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||| |||||| |
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| T |
24770502 |
caaaagtatt |
24770493 |
T |
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