View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18464_low_19 (Length: 238)
Name: NF18464_low_19
Description: NF18464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18464_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 21834591 - 21834804
Alignment:
| Q |
19 |
agattttatgtcaacttacaaatgtgcatttactcattgcttgataatttccaaagtatatataatgtacaatgtaatgcaagcggttgaatgtcgtgtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21834591 |
agattttatgtcaacttacaaatgtgcatttactcattgcttgataatttccaaagtatatataatgtacaatgtaatgcaagcggttgaatgtcgtgtt |
21834690 |
T |
|
| Q |
119 |
gttaaatgtgtgtgtacatagtttta-gttttattttt--------accatcgttgtactctcaaataccacctccaccatttttgtactcaaaacgccg |
209 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21834691 |
gttaaatgtgtgtgttcatagttttatgtttttttttttttttttatccatcgttgtactcccaaatagcacctccaccatttttgtactcaaaacgccg |
21834790 |
T |
|
| Q |
210 |
cttccacctttgct |
223 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21834791 |
cttccacctttgct |
21834804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 197
Target Start/End: Complemental strand, 28525035 - 28524911
Alignment:
| Q |
77 |
tatataatgtacaatgtaatgcaagcggttgaatgtcgtgttgttaaatgtgtgtgt----acatagttttagttttatttttaccatcgttgtactctc |
172 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||| || || ||||||||||||||| | ||||||||||| | ||||||||||||||||||||| ||| |
|
|
| T |
28525035 |
tatataatgtgcaatgcaatgcaagcagttgagtgaagttttgttaaatgtgtgtatgtggacatagttttactattatttttaccatcgttgtaccctc |
28524936 |
T |
|
| Q |
173 |
aaataccacctccaccatttttgta |
197 |
Q |
| |
|
||| ||||||||||||| |||||| |
|
|
| T |
28524935 |
aaacgccacctccaccatctttgta |
28524911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 46926743 - 46926701
Alignment:
| Q |
79 |
tataatgtacaatgtaatgcaagcggttgaatgtcgtgttgtt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46926743 |
tataatgtacaatgtaatgcaagcggttgaatgtcgtgttgtt |
46926701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 51764737 - 51764766
Alignment:
| Q |
26 |
atgtcaacttacaaatgtgcatttactcat |
55 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
51764737 |
atgtcaacttacaaatgtgcatttactcat |
51764766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 14800940 - 14800856
Alignment:
| Q |
116 |
gttgttaaatgtgtgtgtacatagttttagttttatttttaccatcgttgtactctcaaataccacctccaccatttttgtactc |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| ||||| | |||||| |||||| ||||||||||||| ||||||||| |
|
|
| T |
14800940 |
gttgttaaatgtgtgtgtacatagcattagtttcattgttaccgccattgtaccctcaaactccacctccaccatctttgtactc |
14800856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 10614427 - 10614398
Alignment:
| Q |
26 |
atgtcaacttacaaatgtgcatttactcat |
55 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10614427 |
atgtcaacttacaaatgtgcatttactcat |
10614398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University